| APIS family ID | APIS005 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | Gabija | |||||||||||||
| CLAN ID | CLAN004 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | Yirmiya et al., 2023 Antine et al., 2023 | |||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae;g__Bacillus;s__Bacillus subtilis | |||||||||||||
| Gene Location | Start: 87269; End: 88156; Strand: + | |||||||||||||
| Description | Gad1 forms an octameric web that encases the GajAB complex and inhibits DNA recognition and cleavage. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| MKLIGIKTSN CFLVSDNIEG KRYFHSQLDE LLFDGKRATE TYKSDWFKLE KEPSVIEKQM | 60 |
| PAKKINHRYE LKEGFQESEL TPKVIKASYI GEDSEYYEVK GLYDLKFEEI PQQNEKIEFE | 120 |
| MNVIEEIDGE LKLQSHNFNL NYNLLDRIQT HPMLLETKPC YLSQEESYKI IRNHIKANIN | 180 |
| PKFARITSDY DFCLTVVKVL ELYKPHEYIV DLNAMYKRRK PKLEKRFQTK REVEIYKVAP | 240 |
| KAYQSYPIVE PFSGKDVEDL KSNIKKFLDD LMAKINEPLV ECKCCKGRGV ILNEN | 295 |
| Fam ID | Seed protein | Member count | Model | Alignment |
|---|---|---|---|---|
| APIS005 | APD21271.1 | 29 | HMM model | Member alignment |
