| APIS family ID | APIS068 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: 7825; End: 8844; Strand: + | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300035698_004593 | 10147 | 10668 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_10147_10668 | 173 | 19905.28 | -13.0 | 4.4384 | plasmid maintenance system antidote protein VapI | ||
| IMGVR_UViG_3300035698_004593 | 10737 | 11141 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_10737_11141 | 134 | 16157.20 | -0.5 | 5.9448 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 11306 | 11425 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_11306_11425 | 39 | 4379.27 | 2.0 | 8.5513 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 5052 | 5615 | - | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_5052_5615 | 187 | 21645.44 | -2.5 | 5.4476 | cell division protein FtsB | ||
| IMGVR_UViG_3300035698_004593 | 5578 | 5751 | - | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_5578_5751 | 57 | 6673.55 | -1.5 | 5.0343 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 5798 | 6040 | - | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_5798_6040 | 80 | 9287.54 | -8.0 | 4.2626 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 6097 | 6432 | - | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_6097_6432 | 111 | 12117.71 | -10.0 | 4.1642 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 6893 | 7756 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_6893_7756 | 287 | 31365.55 | 3.0 | 7.5745 | DNA (cytosine-5)-methyltransferase 1 | phrog_116 ; phrog_5999 ; phrog_32758 ; phrog_29583 ; phrog_363 | PF00145.20 |
| IMGVR_UViG_3300035698_004593 | 7825 | 8844 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | 339 | 39942.60 | 0.5 | 6.5697 | hypothetical protein | phrog_20113 | |
| IMGVR_UViG_3300035698_004593 | 9020 | 9619 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_9020_9619 | 199 | 22558.83 | 1.5 | 7.2424 | hypothetical protein | ||
| IMGVR_UViG_3300035698_004593 | 9693 | 10061 | + | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_9693_10061 | 122 | 14687.55 | -7.0 | 4.5316 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS068 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | 5 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS046 | 2.60E-115 | 1 | 329 | 4 | 325 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
| APIS005 | 8.21E-82 | 2 | 329 | 10 | 302 | Gabija | APD21271.1 |
| APIS083 | 1.95E-75 | 1 | 329 | 24 | 341 | CP067347_00056 | |
| APIS071 | 1.16E-64 | 1 | 329 | 6 | 336 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS065 | 1.42E-64 | 1 | 329 | 7 | 340 | KJ018209_00009 | |
| APIS088 | 2.12E-41 | 2 | 329 | 8 | 302 | uvig_218805_40 | |
| APIS057 | 6.24E-39 | 1 | 329 | 1 | 319 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | |
| APIS053 | 4.95E-31 | 6 | 328 | 86 | 373 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300007533_000212|3300007533|Ga0102944_100109613 | 40.909 | 2.46e-75 | 244 | 96% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300012931_000043|3300012931|Ga0153915_1000043910 | 38.788 | 8.98e-70 | 229 | 96% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300026184_000080|3300026184|Ga0209918_100067512 | 40.909 | 2.39e-75 | 244 | 96% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300026487_000004|3300026487|Ga0256408_100019828 | 43.202 | 1.34e-81 | 259 | 97% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | 100.000 | 0.0 | 710 | 100% | IMGVR | phrog_20113 |