| APIS family ID | APIS046 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS046 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | 13 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS068 | 3.31E-114 | 1 | 322 | 1 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
| APIS083 | 3.91E-89 | 2 | 322 | 22 | 341 | CP067347_00056 | |
| APIS071 | 2.41E-81 | 2 | 321 | 4 | 335 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS005 | 6.94E-81 | 3 | 322 | 8 | 302 | Gabija | APD21271.1 |
| APIS065 | 9.28E-77 | 2 | 321 | 5 | 339 | KJ018209_00009 | |
| APIS088 | 6.33E-51 | 2 | 321 | 5 | 301 | uvig_218805_40 | |
| APIS057 | 3.90E-49 | 5 | 321 | 2 | 318 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | |
| APIS053 | 9.53E-42 | 8 | 321 | 85 | 373 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |