APIS family ID | APIS046 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN001 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | ||||||||||||||
Phrog | phrog_20113 | |||||||||||||
Host taxa | ||||||||||||||
Gene Location | Start: ; End: ; Strand: | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Fam ID | Seed protein | Member count | Model | Alignment | APIS046 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | 13 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
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APIS068 | 3.31E-114 | 1 | 322 | 1 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
APIS083 | 3.91E-89 | 2 | 322 | 22 | 341 | CP067347_00056 | |
APIS071 | 2.41E-81 | 2 | 321 | 4 | 335 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
APIS005 | 6.94E-81 | 3 | 322 | 8 | 302 | Gabija | APD21271.1 |
APIS065 | 9.28E-77 | 2 | 321 | 5 | 339 | KJ018209_00009 | |
APIS088 | 6.33E-51 | 2 | 321 | 5 | 301 | uvig_218805_40 | |
APIS057 | 3.90E-49 | 5 | 321 | 2 | 318 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | |
APIS053 | 9.53E-42 | 8 | 321 | 85 | 373 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |