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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS046
Inhibited defense system
CLAN ID CLAN001
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265
gene_page: 322 37670 7.984 4.5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_20113
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.71 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS046 IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 13 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN001

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS068 3.31E-114 1 322 1 330 IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844
APIS083 3.91E-89 2 322 22 341 CP067347_00056
APIS071 2.41E-81 2 321 4 335 IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751
APIS005 6.94E-81 3 322 8 302 Gabija APD21271.1
APIS065 9.28E-77 2 321 5 339 KJ018209_00009
APIS088 6.33E-51 2 321 5 301 uvig_218805_40
APIS057 3.90E-49 5 321 2 318 IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277
APIS053 9.53E-42 8 321 85 373 IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300006467_000103|3300006467|Ga0099972_1065465416 44.554 3.07e-66 219 91% IMGVR phrog_20113
IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 100.000 0.0 654 100% IMGVR phrog_20113
IMGVR_UViG_3300010392_001223|3300010392|Ga0118731_11534050814 44.884 8.78e-72 233 91% IMGVR phrog_20113
IMGVR_UViG_3300017990_000012|3300017990|Ga0180436_1000004616 36.923 4.83e-66 219 95% IMGVR phrog_20113
IMGVR_UViG_3300020048_003770|3300020048|Ga0207193_1000065239 43.558 1.11e-86 272 98% IMGVR phrog_20113
IMGVR_UViG_3300022871_000013|3300022871|Ga0222628_100003142 43.987 1.36e-77 249 92% IMGVR phrog_20113
IMGVR_UViG_3300025087_000872|3300025087|Ga0208957_10021752 50.515 1.88e-90 281 89% IMGVR phrog_20113
IMGVR_UViG_3300029267_004697|3300029267|Ga0310068_100135390 48.571 1.74e-92 286 97% IMGVR phrog_20113
IMGVR_UViG_3300033153_003480|3300033153|Ga0366824_100107660 44.272 4.10e-92 286 97% IMGVR phrog_20113
IMGVR_UViG_3300033999_000224|3300033999|Ga0310134_000265_50682_51677 49.315 1.89e-84 266 88% IMGVR phrog_20113
IMGVR_UViG_3300037067_017348|3300037067|Ga0378408_0000962_1548_2558 43.182 2.53e-74 240 91% IMGVR phrog_20113
IMGVR_UViG_3300040801_002061|3300040801|Ga0450804_0888690_15540_16508 40.559 1.10e-60 205 88% IMGVR phrog_20113
IMGVR_UViG_3300041402_000300|3300041402|Ga0402100_0012398_1642_2661 48.773 1.31e-92 287 96% IMGVR phrog_20113