| APIS family ID | APIS057 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN004 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS057 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | 3 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS065 | 8.80E-59 | 1 | 319 | 7 | 343 | KJ018209_00009 | |
| APIS071 | 1.50E-57 | 1 | 320 | 6 | 340 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS046 | 2.27E-51 | 1 | 319 | 4 | 328 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
| APIS083 | 2.82E-46 | 1 | 319 | 24 | 344 | CP067347_00056 | |
| APIS068 | 3.23E-40 | 2 | 316 | 5 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
| APIS005 | 5.13E-39 | 1 | 317 | 9 | 303 | Gabija | APD21271.1 |
| APIS088 | 8.99E-28 | 2 | 318 | 8 | 304 | uvig_218805_40 | |
| APIS053 | 4.15E-22 | 7 | 317 | 87 | 375 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300020037_001785|3300020037|Ga0206644_10027147 | 83.232 | 0.0 | 555 | 100% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300020050_006093|3300020050|Ga0206642_10060502 | 66.768 | 3.19e-146 | 423 | 100% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | 100.000 | 0.0 | 661 | 100% | IMGVR | phrog_20113 |