| APIS family ID | APIS065 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN001 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Shewanellaceae;g__Shewanella; | |||||||||||||
| Gene Location | Start: 4179; End: 5225; Strand: - | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| KJ018209 | 1802 | 2935 | - | KJ018209_00004 | 377 | 43373.85 | 43373.85 | 9.7898 | hypothetical protein | phrog_16315 ; phrog_8470 ; phrog_36382 ; phrog_7484 | PF14284.9 |
| KJ018209 | 2946 | 3062 | - | KJ018209_00005 | 38 | 4657.75 | 4657.75 | 10.4720 | hypothetical protein | ||
| KJ018209 | 3167 | 3283 | - | KJ018209_00006 | 38 | 4356.96 | 4356.96 | 3.7700 | hypothetical protein | ||
| KJ018209 | 3328 | 3627 | - | KJ018209_00007 | 99 | 11515.12 | 11515.12 | 5.6523 | hypothetical protein | ||
| KJ018209 | 3851 | 4177 | - | KJ018209_00008 | 108 | 12712.33 | 12712.33 | 4.4194 | hypothetical protein | phrog_11684 | |
| KJ018209 | 4179 | 5225 | - | KJ018209_00009 | 348 | 39989.06 | 39989.06 | 6.1114 | hypothetical protein | phrog_20113 | |
| KJ018209 | 5280 | 5528 | - | KJ018209_00010 | 82 | 9856.11 | 9856.11 | 6.2119 | hypothetical protein | phrog_15762 ; phrog_29978 | |
| KJ018209 | 5630 | 5866 | - | KJ018209_00011 | 78 | 9419.68 | 9419.68 | 4.5175 | hypothetical protein | phrog_38582 | |
| KJ018209 | 5863 | 6228 | - | KJ018209_00012 | 121 | 14139.36 | 14139.36 | 7.3147 | hypothetical protein | phrog_38754 | |
| KJ018209 | 6319 | 6450 | - | KJ018209_00013 | 43 | 4686.48 | 4686.48 | 9.5737 | hypothetical protein | ||
| KJ018209 | 6438 | 7010 | - | KJ018209_00014 | 190 | 20826.68 | 20826.68 | 8.2455 | DprA-like DNA recombination-mediator protein | phrog_768 | PF02481.18 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS065 | KJ018209_00009 | 11 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS071 | 2.97E-116 | 5 | 351 | 4 | 346 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS046 | 7.32E-78 | 4 | 351 | 1 | 335 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
| APIS068 | 1.28E-63 | 4 | 341 | 1 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
| APIS083 | 1.78E-63 | 2 | 342 | 19 | 342 | CP067347_00056 | |
| APIS057 | 4.56E-55 | 7 | 344 | 1 | 322 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | |
| APIS005 | 3.23E-54 | 5 | 342 | 7 | 303 | Gabija | APD21271.1 |
| APIS088 | 4.55E-32 | 5 | 343 | 5 | 304 | uvig_218805_40 | |
| APIS053 | 4.03E-26 | 7 | 341 | 80 | 374 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |
| APIS | Contig | Range |
|---|---|---|
| APIS065 | KJ018209 | 1802 - 7010 |