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Seed proteins  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS053
Inhibited defense system
CLAN ID CLAN001
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802
gene_page: 375 43503.7 5.2783 -5
Phage property
Phage Assembly id
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_20113
Host taxa
Gene Location Start: ;  End: ;  Strand: 
Description
Note This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein.

Predicted 3D structure by alphafold2 with pTM = 0.54 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS053 IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 4 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN001

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS088 6.51E-58 86 374 12 302 uvig_218805_40
APIS005 3.62E-45 84 373 12 301 Gabija APD21271.1
APIS046 1.54E-41 85 374 8 325 IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265
APIS083 5.97E-38 85 374 28 341 CP067347_00056
APIS068 2.81E-30 85 374 8 330 IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844
APIS071 1.58E-29 87 374 12 336 IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751
APIS065 5.49E-26 86 374 12 340 KJ018209_00009
APIS057 1.94E-20 123 373 46 318 IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_3300009692_000010|3300009692|Ga0116171_10000001337 57.843 5.59e-119 355 80% IMGVR phrog_20113
IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 100.000 0.0 772 100% IMGVR phrog_20113
IMGVR_UViG_3300014206_000056|3300014206|Ga0172377_1000116855 100.000 0.0 621 100% IMGVR phrog_20113
IMGVR_UViG_3300025858_000009|3300025858|Ga0209099_1000006339 57.843 4.41e-119 355 99% IMGVR phrog_20113