| APIS family ID | APIS053 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN004 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | ||||||||||||||
| Gene Location | Start: ; End: ; Strand: | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS053 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 | 4 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS088 | 6.51E-58 | 86 | 374 | 12 | 302 | uvig_218805_40 | |
| APIS005 | 3.62E-45 | 84 | 373 | 12 | 301 | Gabija | APD21271.1 |
| APIS046 | 1.54E-41 | 85 | 374 | 8 | 325 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
| APIS083 | 5.97E-38 | 85 | 374 | 28 | 341 | CP067347_00056 | |
| APIS068 | 2.81E-30 | 85 | 374 | 8 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
| APIS071 | 1.58E-29 | 87 | 374 | 12 | 336 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS065 | 5.49E-26 | 86 | 374 | 12 | 340 | KJ018209_00009 | |
| APIS057 | 1.94E-20 | 123 | 373 | 46 | 318 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 |
| Member | pident | evalue | bitscore | qcovs | phage | host | SourceDB | Pfam | Phrog |
|---|---|---|---|---|---|---|---|---|---|
| IMGVR_UViG_3300009692_000010|3300009692|Ga0116171_10000001337 | 57.843 | 5.59e-119 | 355 | 80% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 | 100.000 | 0.0 | 772 | 100% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300014206_000056|3300014206|Ga0172377_1000116855 | 100.000 | 0.0 | 621 | 100% | IMGVR | phrog_20113 | |||
| IMGVR_UViG_3300025858_000009|3300025858|Ga0209099_1000006339 | 57.843 | 4.41e-119 | 355 | 99% | IMGVR | phrog_20113 |