APIS family ID | APIS088 | |||||||||||||
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Inhibited defense system | ||||||||||||||
CLAN ID | CLAN001 | |||||||||||||
Seed protein property |
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Phage property |
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PMID/References | ||||||||||||||
PDB structures | ; | |||||||||||||
Pfam domains | ||||||||||||||
Phrog | phrog_20113 | |||||||||||||
Host taxa | ||||||||||||||
Gene Location | Start: 31655; End: 32539; Strand: - | |||||||||||||
Description | ||||||||||||||
Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. |
Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
---|---|---|---|---|---|---|---|---|---|---|---|
uvig_218805 | 29247 | 29873 | - | uvig_218805_35 | 210 | 23894.20 | 23894.20 | 5.9412 | hypothetical protein | phrog_8492 ; phrog_659 | PF06378.14 |
uvig_218805 | 30085 | 30477 | - | uvig_218805_36 | 130 | 15081.80 | 15081.80 | 4.1166 | hypothetical protein | phrog_98 ; phrog_8684 | PF09643.13 |
uvig_218805 | 30521 | 30766 | - | uvig_218805_37 | 81 | 9617.02 | 9617.02 | 4.4367 | hypothetical protein | phrog_774 | |
uvig_218805 | 30790 | 31242 | - | uvig_218805_38 | 150 | 18015.86 | 18015.86 | 7.7071 | hypothetical protein | ||
uvig_218805 | 31380 | 31655 | - | uvig_218805_39 | 91 | 10966.15 | 10966.15 | 4.1236 | hypothetical protein | phrog_6343 | |
uvig_218805 | 31655 | 32539 | - | uvig_218805_40 | 285 | 33416.75 | 33416.75 | 4.7576 | hypothetical protein | phrog_20113 | |
uvig_218805 | 32588 | 32764 | - | uvig_218805_41 | 67 | 8061.86 | 8061.86 | 4.0334 | hypothetical protein | phrog_1494 ; phrog_33828 | |
uvig_218805 | 32769 | 33644 | - | uvig_218805_42 | 291 | 34355.45 | 34355.45 | 8.1001 | hypothetical protein | phrog_6931 ; phrog_505 ; phrog_2071 ; phrog_10255 ; phrog_296 | PF13671.9 |
uvig_218805 | 33653 | 34822 | - | uvig_218805_43 | 389 | 44994.98 | 44994.98 | 9.5359 | hypothetical protein | phrog_968 | PF09414.13 |
uvig_218805 | 35080 | 36183 | - | uvig_218805_44 | 367 | 42889.73 | 42889.73 | 10.2987 | hypothetical protein | phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 | PF01385.22 |
uvig_218805 | 35080 | 36183 | - | uvig_218805_44 | 367 | 42889.73 | 42889.73 | 10.2987 | hypothetical protein | phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 | PF07282.14 |
uvig_218805 | 35080 | 36183 | - | uvig_218805_44 | 367 | 42889.73 | 42889.73 | 10.2987 | hypothetical protein | phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 | PF12323.11 |
uvig_218805 | 36242 | 36568 | - | uvig_218805_45 | 108 | 12775.58 | 12775.58 | 9.6032 | hypothetical protein |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Fam ID | Seed protein | Member count | Model | Alignment | APIS088 | uvig_218805_40 | 41 | HMM model | Member alignment |
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Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
---|---|---|---|---|---|---|---|
APIS005 | 5.75E-61 | 1 | 285 | 18 | 303 | Gabija | APD21271.1 |
APIS053 | 1.50E-57 | 1 | 284 | 90 | 374 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 | |
APIS046 | 1.55E-50 | 2 | 284 | 14 | 325 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
APIS083 | 3.53E-48 | 13 | 284 | 53 | 341 | CP067347_00056 | |
APIS068 | 9.86E-40 | 2 | 284 | 14 | 330 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
APIS071 | 2.36E-35 | 3 | 283 | 17 | 335 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
APIS065 | 3.24E-32 | 2 | 283 | 17 | 339 | KJ018209_00009 | |
APIS057 | 4.34E-27 | 8 | 283 | 19 | 318 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 |