sublogo

Seed proteins  | Seed genomic context  | Seed protein 3D structures  |  Structural homologs  |  Family infomation  | Homology to other families  | Family members, sources, and their hosts  

Seed protein information help

APIS family ID APIS088
Inhibited defense system
CLAN ID CLAN001
Seed protein property
Accession ID Gene name Protein length Molecular weight Isoelectric point Charge
uvig_218805_40
gene_page: 285 33416.8 4.7576 -9
Phage property
Phage Assembly id
uvig_218805
PMID/References
PDB structures ;
Pfam domains
Phrog phrog_20113
Host taxa
Gene Location Start: 31655;  End: 32539;  Strand: -
Description
Note This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein.

Seed genomic context      Download table help

Genome accession Start End Strand Protein ID Length Molecular weight Charge Isoelectric point Function Phrog PFAM
uvig_218805 29247 29873 - uvig_218805_35 210 23894.20 23894.20 5.9412 hypothetical protein phrog_8492 ; phrog_659 PF06378.14
uvig_218805 30085 30477 - uvig_218805_36 130 15081.80 15081.80 4.1166 hypothetical protein phrog_98 ; phrog_8684 PF09643.13
uvig_218805 30521 30766 - uvig_218805_37 81 9617.02 9617.02 4.4367 hypothetical protein phrog_774
uvig_218805 30790 31242 - uvig_218805_38 150 18015.86 18015.86 7.7071 hypothetical protein
uvig_218805 31380 31655 - uvig_218805_39 91 10966.15 10966.15 4.1236 hypothetical protein phrog_6343
uvig_218805 31655 32539 - uvig_218805_40 285 33416.75 33416.75 4.7576 hypothetical protein phrog_20113
uvig_218805 32588 32764 - uvig_218805_41 67 8061.86 8061.86 4.0334 hypothetical protein phrog_1494 ; phrog_33828
uvig_218805 32769 33644 - uvig_218805_42 291 34355.45 34355.45 8.1001 hypothetical protein phrog_6931 ; phrog_505 ; phrog_2071 ; phrog_10255 ; phrog_296 PF13671.9
uvig_218805 33653 34822 - uvig_218805_43 389 44994.98 44994.98 9.5359 hypothetical protein phrog_968 PF09414.13
uvig_218805 35080 36183 - uvig_218805_44 367 42889.73 42889.73 10.2987 hypothetical protein phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 PF01385.22
uvig_218805 35080 36183 - uvig_218805_44 367 42889.73 42889.73 10.2987 hypothetical protein phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 PF07282.14
uvig_218805 35080 36183 - uvig_218805_44 367 42889.73 42889.73 10.2987 hypothetical protein phrog_12300 ; phrog_17087 ; phrog_13964 ; phrog_9700 ; phrog_25073 ; phrog_506 PF12323.11
uvig_218805 36242 36568 - uvig_218805_45 108 12775.58 12775.58 9.6032 hypothetical protein

Seed genomic context- JBrowse     

Predicted 3D structure by alphafold2 with pTM = 0.69 Download help

pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Full Sequence
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;      Download help

Structural homologs

No homologs found in AlphaFold database

No homologs found in esmfold database

Family information      Download help

Fam ID Seed protein Member count Model Alignment
APIS088 uvig_218805_40 41 HMM model Member alignment

Host Taxa distribution

Length distribution

Homology to other families       download full data without filtering help

Clan ID: CLAN001

Hit APIS family E-Value Query Start Query End Hit Start Hit End Immune system Seed protein
APIS005 5.75E-61 1 285 18 303 Gabija APD21271.1
APIS053 1.50E-57 1 284 90 374 IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802
APIS046 1.55E-50 2 284 14 325 IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265
APIS083 3.53E-48 13 284 53 341 CP067347_00056
APIS068 9.86E-40 2 284 14 330 IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844
APIS071 2.36E-35 3 283 17 335 IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751
APIS065 3.24E-32 2 283 17 339 KJ018209_00009
APIS057 4.34E-27 8 283 19 318 IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277

Family members, sources, and their hosts        help

Results of representative protein blast against members.

Member pident evalue bitscore qcovs phage host SourceDB Pfam Phrog
IMGVR_UViG_2526164529_000013|2526164529|2526270821 57.491 1.95e-118 350 97% Lacrimispora indolis IMGVR phrog_20113
IMGVR_UViG_2882238243_000002|2882238243|2882239723 55.052 4.88e-115 341 97% Lachnotalea sp900184995 IMGVR phrog_20113
IMGVR_UViG_2921176663_000004|2921176663|2921177889 67.361 4.06e-135 392 95% Blautia_A wexlerae IMGVR phrog_20113
IMGVR_UViG_3300007501_000011|3300007501|Ga0104994_10021425 69.338 1.07e-139 404 94% Blautia IMGVR phrog_20113
IMGVR_UViG_3300010275_000480|3300010275|Ga0129310_1000025278 77.660 6.84e-163 462 95% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300010278_000003|3300010278|Ga0129311_1000032167 77.305 1.33e-161 459 95% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300012176_000002|3300012176|Ga0153952_100000117 53.184 2.94e-89 276 86% IMGVR phrog_20113
IMGVR_UViG_3300029303_000020|3300029303|Ga0168703_100038536 98.592 0.0 570 97% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300029841_000001|3300029841|Ga0245272_10009310 67.361 5.54e-136 394 95% Blautia IMGVR phrog_20113
IMGVR_UViG_3300029872_000351|3300029872|Ga0245317_10002192 77.465 8.37e-164 464 96% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300035520_000763|3300035520|Ga0376475_0000016_115345_116181 62.868 8.62e-125 365 98% IMGVR phrog_20113
IMGVR_UViG_3300044856_000164|3300044856|Ga0455773_001783_1566_2477 67.014 1.48e-135 393 95% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300045988_117002|3300045988|Ga0495776_015026_67572_68486 69.792 2.00e-142 411 95% Blautia IMGVR phrog_20113
IMGVR_UViG_3300045988_122305|3300045988|Ga0495776_034831_70086_70979 78.873 2.04e-165 469 96% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300045988_128508|3300045988|Ga0495776_180933_10049_10960 67.014 5.72e-136 394 95% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_3300045988_130013|3300045988|Ga0495776_162564_16557_17468 68.293 6.30e-138 399 95% Blautia IMGVR phrog_20113
IMGVR_UViG_3300045988_131275|3300045988|Ga0495776_014851_52593_53504 66.899 2.05e-137 398 95% Blautia IMGVR phrog_20113
IMGVR_UViG_3300045988_147965|3300045988|Ga0495776_114730_90460_91371 67.014 1.03e-134 391 95% Lachnospiraceae IMGVR phrog_20113
IMGVR_UViG_7000000232_000104|7000000232|SRS015578_WUGC_scaffold_51237__gene_111343 69.338 1.03e-139 404 95% Blautia IMGVR phrog_20113
MGV-GENOME-0362179_92 67.014 1.07e-134 391 94% Blautia MGV phrog_20113
MGV-GENOME-0370967_72 78.873 1.90e-165 469 95% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0372638_34 67.361 2.63e-135 393 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0375283_186 67.014 4.27e-133 387 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0376196_82 67.361 5.76e-136 394 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0377738_19 67.014 5.95e-136 394 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0378024_80 69.792 2.07e-142 411 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-0378439_58 66.899 2.14e-137 398 94% Blautia MGV phrog_20113
MGV-GENOME-0379397_30 68.293 6.55e-138 399 94% Lachnospiraceae MGV phrog_20113
MGV-GENOME-4433876_45 77.465 6.91e-164 465 96% Lachnospiraceae MGV phrog_20113
uvig_142105_13 98.592 0.0 570 99% GPD phrog_20113
uvig_162192_104 67.361 4.01e-136 395 99% Blautia GPD phrog_20113
uvig_218805_40 100.000 0.0 578 100% GPD phrog_20113
uvig_224236_10 98.944 0.0 572 97% GPD phrog_20113
uvig_236219_94 67.014 4.11e-133 387 95% Blautia GPD phrog_20113
uvig_256903_99 66.667 5.82e-135 392 95% Blautia_A massiliensis GPD phrog_20113
uvig_259587_44 69.444 4.09e-138 400 94% GPD phrog_20113
uvig_271525_3 67.361 2.54e-135 393 95% Blautia GPD phrog_20113
uvig_289422_6 67.247 2.08e-137 398 95% Blautia GPD phrog_20113
uvig_30120_42 77.465 6.65e-164 465 96% Agathobacter rectalis GPD phrog_20113
uvig_332681_33 96.831 0.0 562 97% Lachnospira eligens GPD phrog_20113
uvig_39156_72 78.873 1.83e-165 469 96% Lachnospira eligens GPD phrog_20113