| APIS family ID | APIS083 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Inhibited defense system | ||||||||||||||
| CLAN ID | CLAN004 | |||||||||||||
| Seed protein property |
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| Phage property |
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| PMID/References | ||||||||||||||
| PDB structures | ; | |||||||||||||
| Pfam domains | ||||||||||||||
| Phrog | phrog_20113 | |||||||||||||
| Host taxa | d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Peptostreptococcales;f__Peptostreptococcaceae;g__Clostridioides; | |||||||||||||
| Gene Location | Start: 35664; End: 36632; Strand: - | |||||||||||||
| Description | ||||||||||||||
| Note | This family does not have seed protein, but we infer its function is defending Gabija because it belongs to the same clan as family APIS005 which has seed protein. | |||||||||||||
| Genome accession | Start | End | Strand | Protein ID | Length | Molecular weight | Charge | Isoelectric point | Function | Phrog | PFAM |
|---|---|---|---|---|---|---|---|---|---|---|---|
| CP067347 | 34332 | 34475 | - | CP067347_00051 | 47 | 5787.53 | 5787.53 | 4.1079 | hypothetical protein | phrog_12737 | |
| CP067347 | 34502 | 34942 | - | CP067347_00052 | 146 | 17017.54 | 17017.54 | 5.2592 | hypothetical protein | ||
| CP067347 | 34951 | 35064 | - | CP067347_00053 | 37 | 4623.26 | 4623.26 | 4.8180 | hypothetical protein | ||
| CP067347 | 35096 | 35368 | - | CP067347_00054 | 90 | 10742.49 | 10742.49 | 7.9955 | hypothetical protein | phrog_1810 ; phrog_4502 ; phrog_419 | |
| CP067347 | 35459 | 35629 | - | CP067347_00055 | 56 | 6464.32 | 6464.32 | 4.7740 | hypothetical protein | ||
| CP067347 | 35664 | 36632 | - | CP067347_00056 | 322 | 38315.99 | 38315.99 | 6.4978 | hypothetical protein | phrog_20113 ; phrog_8027 | |
| CP067347 | 36660 | 37061 | - | CP067347_00057 | 133 | 16301.40 | 16301.40 | 4.5071 | hypothetical protein | phrog_4334 | |
| CP067347 | 37101 | 37715 | - | CP067347_00058 | 204 | 23371.78 | 23371.78 | 4.9879 | RNA-splicing ligase RtcB | phrog_1075 ; phrog_32430 | PF01139.20 |
| CP067347 | 37712 | 38353 | - | CP067347_00059 | 213 | 24170.04 | 24170.04 | 9.5013 | tRNA splicing ligase | phrog_1075 | PF01139.20 |
| CP067347 | 38382 | 38849 | - | CP067347_00060 | 155 | 19109.70 | 19109.70 | 4.3658 | hypothetical protein | phrog_9459 | |
| CP067347 | 38887 | 39330 | - | CP067347_00061 | 147 | 17443.43 | 17443.43 | 9.6657 | hypothetical protein | phrog_9643 |
pTM is for the estimate of the TM-score, which is obtained from a pairwise error prediction. The higher pTM score indicates better model quality.
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
| Fam ID | Seed protein | Member count | Model | Alignment | APIS083 | CP067347_00056 | 47 | HMM model | Member alignment |
|---|
| Hit APIS family | E-Value | Query Start | Query End | Hit Start | Hit End | Immune system | Seed protein |
|---|---|---|---|---|---|---|---|
| APIS046 | 1.24E-87 | 21 | 346 | 1 | 328 | IMGVR_UViG_3300009034_000088|3300009034|Ga0115863_100105265 | |
| APIS068 | 1.67E-74 | 21 | 345 | 1 | 332 | IMGVR_UViG_3300035698_004593|3300035698|Ga0374944_618332_7825_8844 | |
| APIS005 | 7.52E-64 | 22 | 346 | 7 | 305 | Gabija | APD21271.1 |
| APIS065 | 1.87E-62 | 19 | 345 | 2 | 342 | KJ018209_00009 | |
| APIS071 | 4.36E-62 | 22 | 343 | 4 | 336 | IMGVR_UViG_3300037628_000643|3300037628|Ga0310922_0000037_90720_91751 | |
| APIS088 | 3.70E-48 | 22 | 345 | 5 | 304 | uvig_218805_40 | |
| APIS057 | 1.98E-43 | 25 | 346 | 2 | 322 | IMGVR_UViG_3300021167_000128|3300021167|Ga0216365_13592277 | |
| APIS053 | 3.04E-38 | 29 | 344 | 86 | 375 | IMGVR_UViG_3300014203_000236|3300014203|Ga0172378_100030802 |