Basic Information | |
---|---|
Species | Citrus clementina |
Cazyme ID | Ciclev10028048m |
Family | GH3 |
Protein Properties | Length: 607 Molecular Weight: 66481 Isoelectric Point: 6.5695 |
Chromosome | Chromosome/Scaffold: 8 Start: 24253923 End: 24258950 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 82 | 317 | 0 |
LASRLGIPLIYGIDAVHGNNSVYGATIFPHNVNLGATRDGDLARRIGVATALEVRASGIHYTFAPCVAVGKDPRWGRYYESYSEDTEIVRKMTSIVSGLQ GRPPKEHPKGYPYVAGRNNVIACAKHFVGDGGTERGINEGNTISTYDDLEKIHMAPYLDCISQGVCTIMASYSSWNGRKLHADHFLLTEVLKNKLGFKGF VISDWEGLDRLSQPHGSNYRYCISTAVNAGIDMVMV |
Full Sequence |
---|
Protein Sequence Length: 607 Download |
MESIYRNPNA HVEDRIKDLL SRMTLKEKIG QMTQIERGVA TPSVLKDLSI GSILSSGGSM 60 PSVNALSAGW ADMVDGFQKA ALASRLGIPL IYGIDAVHGN NSVYGATIFP HNVNLGATRD 120 GDLARRIGVA TALEVRASGI HYTFAPCVAV GKDPRWGRYY ESYSEDTEIV RKMTSIVSGL 180 QGRPPKEHPK GYPYVAGRNN VIACAKHFVG DGGTERGINE GNTISTYDDL EKIHMAPYLD 240 CISQGVCTIM ASYSSWNGRK LHADHFLLTE VLKNKLGFKG FVISDWEGLD RLSQPHGSNY 300 RYCISTAVNA GIDMVMVPHR FDQFFEDLTY LVESGKVPMS RIDDAVERIL RVKFVAGLFE 360 YPFSDKSLLN IVGCKLHREL AREAVRKSLV LLKNGKKPEK PFLPLDRNAK RILVVGTHAD 420 DLGYQCGGWT KTWFGMSGKI TIGTTILEAV KEAVGDETEV IYEKYPSPDT FVAGDFSFAI 480 AAVGEEPYAE TLGDNSELII PLNGGDVISL VAERIPTLAI LVSGRPLVLE PQLLEKADAL 540 VAAWLPGSEG SGIADVVFGD HDFTGRLPVT WYRSVQRLPM NVADNTYDPL FPLGFGLTYK 600 KEKSLH* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 7.0e-41 | 80 | 601 | 592 | + Probable beta-xylosidase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-49 | 389 | 599 | 229 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
pfam00933 | Glyco_hydro_3 | 5.0e-84 | 24 | 352 | 335 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 1.0e-84 | 23 | 454 | 442 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 2.0e-87 | 16 | 599 | 658 | + beta-D-glucoside glucohydrolase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN81230.1 | 0 | 1 | 606 | 1 | 639 | hypothetical protein [Vitis vinifera] |
EMBL | CBI16000.1 | 0 | 23 | 606 | 1 | 586 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002279757.1 | 0 | 1 | 606 | 113 | 720 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313393.1 | 0 | 1 | 605 | 1 | 602 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525596.1 | 0 | 4 | 598 | 5 | 599 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 4 | 603 | 4 | 603 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1iex_A | 0 | 4 | 603 | 4 | 603 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1iew_A | 0 | 4 | 603 | 4 | 603 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1iev_A | 0 | 4 | 603 | 4 | 603 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
PDB | 1ieq_A | 0 | 4 | 603 | 4 | 603 | A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye Seeds |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
DY265467 | 368 | 131 | 493 | 0 |
FC882555 | 290 | 131 | 420 | 0 |
FC911602 | 284 | 1 | 284 | 0 |
DY274445 | 281 | 1 | 281 | 0 |
DY274445 | 54 | 278 | 331 | 5e-28 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|