Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00011279m |
Family | GT14 |
Protein Properties | Length: 365 Molecular Weight: 39976.6 Isoelectric Point: 7.3931 |
Chromosome | Chromosome/Scaffold: 084488 Start: 2 End: 2319 |
Description | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT14 | 48 | 309 | 0 |
FAYLISGSAGDAGMMRRCLLALYHPRNRYILHLDAEAPDADRAGLAAFVAAHPVLSAAGNVRVIEKANLVTYRGPTMVTTTLHAAAAFLWGEGHGRGADW DWFINLSASDYPLVTQDDLMHVFSKLPRDLNFIDHTSNISWKAFARAMPVIIDPALYMKTKGDLFWVPEKRSLPTAFKLFTGSAWMVLSRAFVEYLIWGW DNLPRTVLMYYANFISSPEGYFHTVACNAAAFRNTTVNSDLHFISWDNPPMQHPHHLTLADW |
Full Sequence |
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Protein Sequence Length: 365 Download |
MESAACPARA AASVDLRWLL SQRPPPPLYV ESTLSRAAPP AASLPPRFAY LISGSAGDAG 60 MMRRCLLALY HPRNRYILHL DAEAPDADRA GLAAFVAAHP VLSAAGNVRV IEKANLVTYR 120 GPTMVTTTLH AAAAFLWGEG HGRGADWDWF INLSASDYPL VTQDDLMHVF SKLPRDLNFI 180 DHTSNISWKA FARAMPVIID PALYMKTKGD LFWVPEKRSL PTAFKLFTGS AWMVLSRAFV 240 EYLIWGWDNL PRTVLMYYAN FISSPEGYFH TVACNAAAFR NTTVNSDLHF ISWDNPPMQH 300 PHHLTLADWD RMLASGAPFA RKFPRDDPVL DRIDADVLGR RPGAAGTVAP GGWCAAGGGE 360 GDGSG |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02485 | Branch | 7.0e-68 | 48 | 313 | 270 | + Core-2/I-Branching enzyme. This is a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme and core-2 branching enzyme . I-branching enzyme is responsible for the production of the blood group I-antigen during embryonic development. Core-2 branching enzyme forms crucial side-chain branches in O-glycans. | ||
PLN03183 | PLN03183 | 4.0e-167 | 48 | 343 | 296 | + acetylglucosaminyltransferase family protein; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0008375 | acetylglucosaminyltransferase activity |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAV49991.1 | 0 | 21 | 361 | 43 | 384 | putative N-acetylglucosaminyltransferase [Hordeum vulgare subsp. vulgare] |
EMBL | CAH10050.1 | 0 | 28 | 361 | 50 | 384 | BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein [Triticum aestivum] |
RefSeq | NP_001050958.1 | 0 | 22 | 343 | 53 | 376 | Os03g0692000 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147735.1 | 0 | 21 | 350 | 61 | 390 | BGGP Beta-1-3-galactosyl-O-glycosyl-glycoprotein [Zea mays] |
RefSeq | XP_002466639.1 | 0 | 21 | 354 | 61 | 394 | hypothetical protein SORBIDRAFT_01g011480 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3otk_D | 0.00000008 | 61 | 269 | 98 | 285 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_C | 0.00000008 | 61 | 269 | 98 | 285 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_B | 0.00000008 | 61 | 269 | 98 | 285 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 3otk_A | 0.00000008 | 61 | 269 | 98 | 285 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
PDB | 2gam_D | 0.0000003 | 61 | 269 | 98 | 285 | A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EE189170 | 272 | 72 | 343 | 0 |
EB640333 | 262 | 48 | 309 | 0 |
DR799268 | 263 | 81 | 343 | 0 |
EC876305 | 260 | 84 | 343 | 0 |
EE160166 | 254 | 90 | 343 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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