y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G018600.2 |
Family | AA4 |
Protein Properties | Length: 534 Molecular Weight: 58597.1 Isoelectric Point: 6.7497 |
Chromosome | Chromosome/Scaffold: 07 Start: 1430589 End: 1437643 |
Description | FAD-linked oxidases family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA4 | 72 | 277 | 4.6e-24 |
LSYFKGVLGEKNVVQDEDRLETANIDWMHKYKGSSKLLLLPRNTEEVSKILEYCNSRRLAVVPQGGNTGLVGGSVPVFDEVIINAGSMNKIIAFDKVSGI LVCEAGCILENLISYLDNQGFIMPLDLGAKGSCQIGGNVSTNAGGLRFVRYGSLHGNVLGLEAVLANGDVLDMLGTLRKDNTGYDLKHLFIGSEGSLGIV TKVSIL |
Full Sequence |
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Protein Sequence Length: 534 Download |
MDKYKVTHRL LKQSIKSLVN RQLTSNNPIY RSISALPLGN GGRNPQLYRS FGSLATKVER 60 NPSFSSLNSD DLSYFKGVLG EKNVVQDEDR LETANIDWMH KYKGSSKLLL LPRNTEEVSK 120 ILEYCNSRRL AVVPQGGNTG LVGGSVPVFD EVIINAGSMN KIIAFDKVSG ILVCEAGCIL 180 ENLISYLDNQ GFIMPLDLGA KGSCQIGGNV STNAGGLRFV RYGSLHGNVL GLEAVLANGD 240 VLDMLGTLRK DNTGYDLKHL FIGSEGSLGI VTKVSILTPP KLSSVNIAFL ACEDYLSCQK 300 LLSEAKRKLG EILSAFEFLD SHAMDLVLNH LEGVRNPLPS AVHNFYVLIE TTGSDESYDK 360 EKLEAFLLHS MESGLISDGV LAQDINQASS FWRIREGVPE ALMRAGPVYK YDLSIPVEKM 420 YSLVEDMRLR LGQSANVVGY GHLGDGNLHL NISAPRYDDT ILAQIEPYVY EWTSKHRGSI 480 SAEHGLGLMK ANEIFYSKSH ETVQLMASIK KLLDPNGILN PYKVLPHSLC SYS* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK11230 | PRK11230 | 5.0e-40 | 84 | 526 | 469 | + glycolate oxidase subunit GlcD; Provisional | ||
PLN02805 | PLN02805 | 3.0e-43 | 8 | 530 | 561 | + D-lactate dehydrogenase [cytochrome] | ||
pfam02913 | FAD-oxidase_C | 9.0e-61 | 281 | 524 | 252 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
TIGR00387 | glcD | 4.0e-78 | 110 | 523 | 429 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
COG0277 | GlcD | 2.0e-109 | 74 | 527 | 465 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAB16815.1 | 0 | 46 | 531 | 41 | 523 | actin interacting protein [Arabidopsis thaliana] |
RefSeq | NP_568003.2 | 0 | 46 | 531 | 73 | 558 | FAD linked oxidase family protein [Arabidopsis thaliana] |
RefSeq | XP_002268002.1 | 0 | 49 | 533 | 68 | 552 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002310828.1 | 0 | 1 | 533 | 1 | 530 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002521506.1 | 0 | 48 | 532 | 81 | 565 | d-lactate dehydrognease 2, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3pm9_F | 0 | 66 | 525 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
PDB | 3pm9_E | 0 | 66 | 525 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
PDB | 3pm9_D | 0 | 66 | 525 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
PDB | 3pm9_C | 0 | 66 | 525 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
PDB | 3pm9_B | 0 | 66 | 525 | 12 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO838775 | 330 | 112 | 441 | 0 |
GO839525 | 328 | 101 | 428 | 0 |
CO071824 | 285 | 94 | 378 | 0 |
CO071363 | 284 | 94 | 377 | 0 |
HO419275 | 401 | 129 | 528 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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