Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10016513m |
Family | CBM43 |
Protein Properties | Length: 236 Molecular Weight: 24186.1 Isoelectric Point: 6.8818 |
Chromosome | Chromosome/Scaffold: 2 Start: 34807976 End: 34810333 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 138 | 218 | 3.5e-32 |
WCIANPSASETGLQVALDYACGFGGADCSAIQPGASCYNPNTVRDHASYAFNDYYHKNPAPTSCVFGGAAQLTYTDPSKLC |
Full Sequence |
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Protein Sequence Length: 236 Download |
MGSRALQCFS IFLLHLLLSP GSSVAEKLQL EASQKNRKLE SQESRILPSS PSLFITQLDA 60 NVPVVNPTTP GTSPPTVNPP PSPTITGPSP PSPTTTGPSP PSPTTTGPSP PSPTTTGPTI 120 TPPSPSTTTT PASSGGAWCI ANPSASETGL QVALDYACGF GGADCSAIQP GASCYNPNTV 180 RDHASYAFND YYHKNPAPTS CVFGGAAQLT YTDPSKLCHQ KGTINYMSSP VLTLT* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 6.0e-21 | 138 | 207 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-34 | 138 | 215 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK94231.1 | 0 | 1 | 221 | 1 | 231 | unknown [Populus trichocarpa] |
EMBL | CBI30817.1 | 2.00386e-43 | 134 | 216 | 31 | 113 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002271903.1 | 4.2039e-45 | 38 | 215 | 32 | 207 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331855.1 | 3.00018e-42 | 136 | 215 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519744.1 | 0 | 22 | 219 | 16 | 197 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.00000000000004 | 134 | 215 | 9 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |