Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10032559m |
Family | CBM43 |
Protein Properties | Length: 247 Molecular Weight: 25219.3 Isoelectric Point: 7.2127 |
Chromosome | Chromosome/Scaffold: 4 Start: 16092830 End: 16094966 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 105 | 186 | 1.5e-34 |
WCVASQSASHTALQVALDYACGYGADCSAIQPGGSCYNPNTLRDHASYAFNSFYQKNPIPSSCNFGGAAVSTSTNPSSGTCQ |
Full Sequence |
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Protein Sequence Length: 247 Download |
MGRAASFIQI SLLLFCLFLC SGASVTSAQL GIEDKNVQLN SSISTTKRDI TTPITTVPII 60 TPATPTSSIP ILNPTSTPET TSPAATTPSL TPPTTTTPVS SGASWCVASQ SASHTALQVA 120 LDYACGYGAD CSAIQPGGSC YNPNTLRDHA SYAFNSFYQK NPIPSSCNFG GAAVSTSTNP 180 SSGTCQYQST STSSSILNTT NSNGATVYGA VPNPPSPTAS LALAAAKPHS MSIFFPAPCF 240 LMLQLV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-21 | 105 | 174 | 76 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-33 | 105 | 180 | 77 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 0 | 22 | 200 | 26 | 205 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 1.4013e-45 | 33 | 200 | 37 | 205 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001031450.1 | 1.4013e-45 | 82 | 241 | 58 | 219 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002283721.1 | 0 | 19 | 245 | 18 | 235 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002441577.1 | 0 | 38 | 200 | 26 | 170 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-18 | 95 | 191 | 4 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |