Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 29842.m003553 |
Family | PL1 |
Protein Properties | Length: 393 Molecular Weight: 42889 Isoelectric Point: 9.3341 |
Chromosome | Chromosome/Scaffold: 29842 Start: 260824 End: 262271 |
Description | root hair specific 14 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 111 | 310 | 0 |
WIIFAKDMVITLKNELIVNSFKTIDGRGAKVEISNGPCITIQGVSHVIIHGISIHDCKPGKSGMVRSSPTHVGQRSGSDGDAIVIFASSNVWIDHCYIAH GTDGLIDVIHASTGVTISNNYFADHDKVMLLGHNDGYSADKIMKVTIAFNHFGSGLIERMPRVRFGYAHVANNRYDEWKMYAIGGSADPTIFSEGNYFIA |
Full Sequence |
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Protein Sequence Length: 393 Download |
MASPAPFRCL SCLLLYLALT SQAHAADYKP LSSYLPKNSK KLFNTVDSCW RTNPNWATNR 60 HSLADCAVGF GKAAIGGKFG AIYVVTTPFD DPANPKPGTL RYGVIQTKPL WIIFAKDMVI 120 TLKNELIVNS FKTIDGRGAK VEISNGPCIT IQGVSHVIIH GISIHDCKPG KSGMVRSSPT 180 HVGQRSGSDG DAIVIFASSN VWIDHCYIAH GTDGLIDVIH ASTGVTISNN YFADHDKVML 240 LGHNDGYSAD KIMKVTIAFN HFGSGLIERM PRVRFGYAHV ANNRYDEWKM YAIGGSADPT 300 IFSEGNYFIA PDVYSSKQVT KREAKSGWKN WKWRSSKDVF MNGAYFLQSG YGSIIPPYSR 360 TQSFPVAPGL LVPALTSDAG PLRCVTGKSC GYQ |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-26 | 181 | 308 | 140 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-59 | 123 | 308 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-71 | 117 | 312 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 390 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 390 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 390 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331545.1 | 0 | 1 | 390 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 1 | 393 | 1 | 393 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 44 | 380 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 44 | 380 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-19 | 62 | 310 | 1 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 2e-16 | 123 | 315 | 73 | 283 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000003 | 126 | 308 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |