Basic Information | |
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Species | Citrus sinensis |
Cazyme ID | orange1.1g044170m |
Family | PL1 |
Protein Properties | Length: 373 Molecular Weight: 40967.4 Isoelectric Point: 8.1651 |
Chromosome | Chromosome/Scaffold: 00227 Start: 166172 End: 167599 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 85 | 290 | 0 |
IQKEPLWIIFAKDMNIKLQQELIVQGKKTIDGRGANVHIANGAGFMLQFVQNVIIHGIHIHNISPRSGGMIRDSVDHVGKRGQSDGDAVSIFGSSNIWLD HLTLSQAHDGLIDAIQASTAITISNCHFSNHDKAILLGASDTFTEDKKMQVTVAFNRFDKGLVQRMPCVRFGFAHVVNNDYNQWEMYAIGGLKGPTILSQ GNRFFA |
Full Sequence |
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Protein Sequence Length: 373 Download |
LSKQTAARRG LLNAESGQCE ATNPIDNCWR CKENWAENRQ ALAGCALGFG IKATGGKGGK 60 IYEVTDPSDN DMENPKVGTL RHAVIQKEPL WIIFAKDMNI KLQQELIVQG KKTIDGRGAN 120 VHIANGAGFM LQFVQNVIIH GIHIHNISPR SGGMIRDSVD HVGKRGQSDG DAVSIFGSSN 180 IWLDHLTLSQ AHDGLIDAIQ ASTAITISNC HFSNHDKAIL LGASDTFTED KKMQVTVAFN 240 RFDKGLVQRM PCVRFGFAHV VNNDYNQWEM YAIGGLKGPT ILSQGNRFFA SDNQNTKEVT 300 KRMNCSPEEG KSWIWRSEGD VFLNGAYFNS SGDPKKQIEY QMDDVIKPKP GTEVERITKF 360 AGALVCKPGQ KC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-31 | 112 | 363 | 279 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 8.0e-64 | 103 | 288 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-69 | 97 | 292 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAH20311.1 | 0 | 9 | 372 | 1 | 365 | AT3G01270 [Arabidopsis thaliana] |
EMBL | CAN79927.1 | 0 | 5 | 372 | 72 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 5 | 372 | 101 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002282500.1 | 0 | 5 | 372 | 4 | 371 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330086.1 | 0 | 12 | 372 | 77 | 435 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 23 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 23 | 365 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-21 | 103 | 288 | 61 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 4e-20 | 106 | 265 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 1e-17 | 37 | 292 | 3 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV885630 | 213 | 161 | 373 | 0 |
DY275180 | 342 | 1 | 328 | 0 |
HO778688 | 373 | 1 | 373 | 0 |
CO103662 | 273 | 62 | 334 | 0 |
FG606120 | 323 | 6 | 328 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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