Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.007G265100.1 |
Family | PL1 |
Protein Properties | Length: 440 Molecular Weight: 48945.6 Isoelectric Point: 8.1788 |
Chromosome | Chromosome/Scaffold: 07 Start: 43967311 End: 43969120 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 157 | 358 | 0 |
LWITFKGSMIITLEQELIITSNKTIDARGANVQIAKGAGITVQFVKNVIIHGLHIHHIITGTGGTIRDAEDHFGLRTASDGDGISLFGATNIWLDHLSVT NCSDGLIDVIQGSTAVTISNCHFTDHNEVLLFGASDSYTEDQKMQITVALNHFGKGLVERMPRCRHGFIHVVNNDYTHWLMYAIGGSRNPTIISQGNRYT AS |
Full Sequence |
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Protein Sequence Length: 440 Download |
MAAHSYSLFL LISLSFVVQI PTPQAHIAEY DDYWKARKLE AIENLNKAYH PNPEEVVHHY 60 NDQFAKTMIK LNSTRRELKG TKENGPCEIT NPVDSCWRCD PNWEKNRKRL ADCAPGFARG 120 TTGGKEGEFY VVTDPSDDIL NPKPGTLRHA VIQRRPLWIT FKGSMIITLE QELIITSNKT 180 IDARGANVQI AKGAGITVQF VKNVIIHGLH IHHIITGTGG TIRDAEDHFG LRTASDGDGI 240 SLFGATNIWL DHLSVTNCSD GLIDVIQGST AVTISNCHFT DHNEVLLFGA SDSYTEDQKM 300 QITVALNHFG KGLVERMPRC RHGFIHVVNN DYTHWLMYAI GGSRNPTIIS QGNRYTASST 360 FASREVTKRV FAPPEVWKKW NWISEGDHFE NGAFFVSSGD PKASKKYGTN KMMPFNPGEM 420 APKLTKYAGT LNCKPGKPC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 9.0e-13 | 26 | 78 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 2.0e-25 | 120 | 353 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-59 | 171 | 355 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-69 | 165 | 359 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 18 | 439 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 18 | 439 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002270089.1 | 0 | 17 | 439 | 18 | 443 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 10 | 439 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 439 | 1 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 91 | 431 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 5e-20 | 110 | 346 | 2 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 1e-16 | 120 | 358 | 17 | 279 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.00000000000002 | 173 | 356 | 128 | 331 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |