Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma17g01470.2 |
Family | PL1 |
Protein Properties | Length: 399 Molecular Weight: 43904.2 Isoelectric Point: 8.8578 |
Chromosome | Chromosome/Scaffold: 17 Start: 902574 End: 905392 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 120 | 319 | 0 |
IIFDKDMVIRLKNELIMNSYKTIDGRGAKVEITDGPCITIQGVSHVIIHGINIHDCKPAKPGLVRSTPDHVGHRLGSDGDAISIFDSSNIWIDHCFLARS TDGLIDVIHASTAIAISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNLYVAP |
Full Sequence |
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Protein Sequence Length: 399 Download |
MATSTSLLLL SCFMLHLAST FVIVHSTDNK YYNTLPTSKY MIPESPKKAL LNVIDSCWRT 60 KPNWASNRQA LADCAIGFGK DATGGKYGAI YRVKDPSDDP VNPKPGTLRY GAIQTEPLWI 120 IFDKDMVIRL KNELIMNSYK TIDGRGAKVE ITDGPCITIQ GVSHVIIHGI NIHDCKPAKP 180 GLVRSTPDHV GHRLGSDGDA ISIFDSSNIW IDHCFLARST DGLIDVIHAS TAIAISNNYF 240 TQHDKVMLLG HNDQYTADKI MRVTIAFNRF ASGLTERMPR VRFGYAHVVN NKYDEWKMYA 300 IGGSANPTIL SEGNLYVAPN DPNAKQVTKR EGKENWKSWK WRSSKDLFLN GAYFVPSGFG 360 SCAPNYSPTQ SFSAAPAYLV PAMTLNAGPT NCVVGRAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-26 | 138 | 316 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-67 | 131 | 314 | 207 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-80 | 125 | 320 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002263615.1 | 0 | 1 | 398 | 1 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 398 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002317132.1 | 0 | 1 | 398 | 1 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518441.1 | 0 | 31 | 398 | 12 | 377 | Pectate lyase precursor, putative [Ricinus communis] |
RefSeq | XP_002518442.1 | 0 | 25 | 398 | 24 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 52 | 388 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 52 | 388 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 120 | 318 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 8e-16 | 129 | 320 | 71 | 280 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000001 | 144 | 294 | 140 | 302 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |