Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G062400.1 |
Family | PL1 |
Protein Properties | Length: 402 Molecular Weight: 44347 Isoelectric Point: 8.1384 |
Chromosome | Chromosome/Scaffold: 01 Start: 6257997 End: 6260011 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 115 | 321 | 0 |
IQDEPLWIVFARDMTIQLKEELIMNSFKTIDGRGASVHITGGPCITIQFVTNIIIHGLHIHDCKQGGNAMVRDSPRHYGWRTTSDGDGVSIFGGSHIWVD HNSLSNCKDGLIDAIYGSTAITISNNHMTHHDKVMLLGHSDSYMKDKNMQVTIAFNHFGKGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFTAP |
Full Sequence |
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Protein Sequence Length: 402 Download |
MAIPSLSLLF LFTSLPLFSS SPVKDPELVV QDLHRAINVS RRNLKYLSCA TGNPIDDCWR 60 CDPNWEKNRR RLADCAIGFG KNAIGGRDGK LYVVTDSSDD DPVNPKPGTL RHAVIQDEPL 120 WIVFARDMTI QLKEELIMNS FKTIDGRGAS VHITGGPCIT IQFVTNIIIH GLHIHDCKQG 180 GNAMVRDSPR HYGWRTTSDG DGVSIFGGSH IWVDHNSLSN CKDGLIDAIY GSTAITISNN 240 HMTHHDKVML LGHSDSYMKD KNMQVTIAFN HFGKGLIQRM PRCRHGYFHV VNNDYTHWEM 300 YAIGGSANPT INSQGNRFTA PNDIFSKEVT KHEDAPESEW KNWNWRSEGD LMVNGAFFTR 360 SGAGASSSYA KASSLGARPS SHVATITTNA GALNCKKGSR C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-26 | 140 | 318 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-69 | 133 | 318 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-79 | 127 | 322 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90476.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium raimondii] |
GenBank | ADB90477.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90478.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium hirsutum] |
GenBank | ADB90479.1 | 0 | 24 | 401 | 34 | 411 | pectate lyase [Gossypium barbadense] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 53 | 393 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 53 | 393 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-18 | 122 | 318 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 2e-16 | 125 | 324 | 114 | 336 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.0000000000008 | 166 | 392 | 115 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |