Basic Information | |
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Species | Oryza sativa |
Cazyme ID | LOC_Os10g31910.1 |
Family | PL1 |
Protein Properties | Length: 492 Molecular Weight: 51538.9 Isoelectric Point: 6.2646 |
Chromosome | Chromosome/Scaffold: 10 Start: 16755564 End: 16760878 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 144 | 342 | 0 |
VFAGDMTIRLNEELLVNSYKTIDGRGANVHVGAGGACITLQYVSNVIIHNIHVHDCVPAGNANVRASPTHYGWRTRSDGDGISLYSARDVWVDHCALSRC ADGLIDAIMGSTAITVSNSYFSHHNEVMLLGHSDGYLPDSAMQVTIAFNHFGIQLVQRMPRCRRGYFHIVNNDYTAWEMYAIGGSASPTINSQGNRYIA |
Full Sequence |
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Protein Sequence Length: 492 Download |
MAGPVESTRI TLLLVAATLL LLPPPLAASL NSSLPDPAAV VADFHSKVAT SRRRMQKADG 60 GGGGGGGGCL TGNPIDHCWR CAGTDWRQDR QRLADCGIGF GRNAMGGKGG PVYVVTDPSD 120 GDPVNPAPGT LRYGAIQEGP LWIVFAGDMT IRLNEELLVN SYKTIDGRGA NVHVGAGGAC 180 ITLQYVSNVI IHNIHVHDCV PAGNANVRAS PTHYGWRTRS DGDGISLYSA RDVWVDHCAL 240 SRCADGLIDA IMGSTAITVS NSYFSHHNEV MLLGHSDGYL PDSAMQVTIA FNHFGIQLVQ 300 RMPRCRRGYF HIVNNDYTAW EMYAIGGSAS PTINSQGNRY IAPADPNAKE VTKRVDTEEG 360 QWAGWNWRTE GDMMVNGAFF VPSGEGLEAI YDKASSTDPK SSALVDQLTA GAGVLGGPRD 420 NGEAAAYAGV NYAGVGTGGG GGGGAGAGGM GYGYLGMVYG SGGNWSCRAD LTLQLTSLFL 480 ALFALICLHP L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 5.0e-25 | 99 | 338 | 259 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-65 | 155 | 340 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-75 | 148 | 343 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0003824 | catalytic activity |
GO:0008150 | biological_process |
GO:0008152 | metabolic process |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK54283.1 | 0 | 1 | 418 | 1 | 418 | AC034258_1 putative pectate lyase [Oryza sativa Japonica Group] |
GenBank | AAP54096.1 | 0 | 1 | 419 | 1 | 419 | pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF26675.2 | 0 | 1 | 419 | 1 | 419 | Os10g0457200 [Oryza sativa Japonica Group] |
GenBank | EEC67092.1 | 0 | 1 | 491 | 1 | 491 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
GenBank | EEE51077.1 | 0 | 1 | 491 | 1 | 454 | hypothetical protein OsJ_31774 [Oryza sativa Japonica Group] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 73 | 415 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 73 | 415 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 138 | 341 | 45 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000008 | 157 | 340 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000003 | 186 | 413 | 113 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |