Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.005G227000.1 |
Family | PL1 |
Protein Properties | Length: 455 Molecular Weight: 52081.1 Isoelectric Point: 7.9802 |
Chromosome | Chromosome/Scaffold: 05 Start: 60955390 End: 60957774 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 165 | 371 | 0 |
VIQNKPLWIIFAKDMHIKLSKELIVQSNKTIDGRGANVHIAHGCGITLQFVHNVIIHNIHIHHVIESQGGLIRDSEDHYGYRTIGDGDGISIFGSSNIWL DHISMSECQDGLIDVIQGSTAITISNCHFTHHDHVILLGASDTYSNDQYMQVTIAFNHFGKELIQRMPRCRWGFFHVVNNDYTHWKMYAIGGSTHPTIIS EGNRYIA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MEITKLRLVF LFSFFTTIPR LWANIVEFDD FWKQREEEAW KIALASYEPN PENVTNHLNY 60 KVNKALNKRS SNKIIEFKGV ITNDTIRYLR GKHKKYTGPC MATNPIDRCW RCRENWAENR 120 KRLALCGLGF GRKATGGDEG DYYLVTDNSD DDVLEPKPGT LRHAVIQNKP LWIIFAKDMH 180 IKLSKELIVQ SNKTIDGRGA NVHIAHGCGI TLQFVHNVII HNIHIHHVIE SQGGLIRDSE 240 DHYGYRTIGD GDGISIFGSS NIWLDHISMS ECQDGLIDVI QGSTAITISN CHFTHHDHVI 300 LLGASDTYSN DQYMQVTIAF NHFGKELIQR MPRCRWGFFH VVNNDYTHWK MYAIGGSTHP 360 TIISEGNRYI APDDPNTKEI TNRNYAPESE WKNWVWRSEG DLYMNGAFFR TSGPPSPPNL 420 NFSEKDVIKA KPATFVRRLT RFAGTLDCKE YVKC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 4.0e-15 | 24 | 66 | 43 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 5.0e-20 | 263 | 367 | 116 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-49 | 186 | 369 | 206 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-58 | 178 | 373 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 19 | 454 | 22 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 19 | 454 | 51 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 454 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 10 | 454 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 1 | 448 | 4 | 434 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 104 | 446 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-19 | 185 | 360 | 62 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pcl_A | 1e-17 | 182 | 407 | 71 | 312 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
PDB | 1vbl_A | 0.000000000000001 | 187 | 346 | 128 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |