Basic Information | |
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Species | Phaseolus vulgaris |
Cazyme ID | Phvul.004G026400.1 |
Family | PL1 |
Protein Properties | Length: 442 Molecular Weight: 48757.6 Isoelectric Point: 8.1723 |
Chromosome | Chromosome/Scaffold: 04 Start: 2692637 End: 2694516 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 162 | 361 | 0 |
ITFERSMIISLQQELMISSDKTIDGRGANVQIRDGGGLTMQFVNNVIIHGIRVKDIVPKEGGLIRDSYNHIGQRTRSDGDAISVFGASNIWIDHVSLSNS ADGLIDVIQGSTAITISNCHMTRHNDVMLFGAADSYTGDKIMQITVAFNHFGQGLIQRMPRCRMGFFHVLNNDYTHWMMYAIGGSAGPTILSQGNRFIAP |
Full Sequence |
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Protein Sequence Length: 442 Download |
MLGGTMASKV VFSLLATLAI TIPCLEAGIA EFDEFLRAQS EKAHEIALQS YVPTPEFVTN 60 DLNYHVHLSM QNVTRRGLKE GNNAIGKPCE SSNPIDNCWR CNKDWAKDRY RLAKCGKGFG 120 RRAVGGLGGP IYVVTDNSDE DMINPKPGTL RYAVTQKGPL WITFERSMII SLQQELMISS 180 DKTIDGRGAN VQIRDGGGLT MQFVNNVIIH GIRVKDIVPK EGGLIRDSYN HIGQRTRSDG 240 DAISVFGASN IWIDHVSLSN SADGLIDVIQ GSTAITISNC HMTRHNDVML FGAADSYTGD 300 KIMQITVAFN HFGQGLIQRM PRCRMGFFHV LNNDYTHWMM YAIGGSAGPT ILSQGNRFIA 360 PNNDAAKEIT HRDYATPEEW KNWQWQSDMD LLMNGATFNS SGSPIAMKHK KGFIMKPRDG 420 THVSRLTRHS GALNCFVGLP C* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 2.0e-15 | 28 | 78 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 8.0e-28 | 175 | 358 | 196 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-65 | 173 | 358 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-77 | 168 | 362 | 206 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAA86241.1 | 0 | 4 | 441 | 2 | 450 | pectate lyase homolog [Medicago sativa] |
GenBank | ACU23277.1 | 0 | 7 | 441 | 9 | 443 | unknown [Glycine max] |
EMBL | CAN79927.1 | 0 | 20 | 441 | 19 | 439 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311599.1 | 0 | 14 | 441 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002520133.1 | 0 | 8 | 441 | 7 | 440 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 93 | 433 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 93 | 433 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-22 | 124 | 359 | 22 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 6e-16 | 157 | 358 | 108 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.00000000000003 | 173 | 397 | 73 | 313 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |