Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma10g24630.1 |
Family | PL1 |
Protein Properties | Length: 451 Molecular Weight: 49866.4 Isoelectric Point: 8.1344 |
Chromosome | Chromosome/Scaffold: 10 Start: 32264269 End: 32270005 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 164 | 369 | 0 |
IQDRPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWVD HNSLSHCADGLVDAVMGSTAITISNNHFTHHNEVILLGHSDSYTRDKLMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRYNA |
Full Sequence |
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Protein Sequence Length: 451 Download |
MAVSSSATKW VLFLLLALLI REEAMAMATT PQISDLRNVE VERHRLPSLT NSSMVERAKE 60 ADKLNEQAAV ANPEEVVSMV EMSIQNSTER RKLGYFSCGT GNPIDDCWRC DPNWQRNRKR 120 LADCGIGFGR NAIGGRDGKF YVVTDPRDDD PVNPKPGTLR HAVIQDRPLW IVFKRDMVIQ 180 LKQELIMNSF KTIDARGVNV HIANGACITI QFVTNVIIHG LHIHDCKPTG NAMVRSSPTH 240 FGWRTMADGD AISIFGSSHI WVDHNSLSHC ADGLVDAVMG STAITISNNH FTHHNEVILL 300 GHSDSYTRDK LMQVTIAYNH FGEGLIQRMP RCRHGYFHVV NNDYTHWEMY AIGGSANPTI 360 NSQGNRYNAP TNPFAKEVTK RVETAETQWK GWNWRSEGDL LLNGAYFTPS GAGASASYAR 420 ASSLGAKSSS MVDSMTSNAG ALGCKRGRQC * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 7.0e-27 | 189 | 382 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-71 | 182 | 367 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-80 | 176 | 370 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK66161.1 | 0 | 83 | 450 | 1 | 368 | pectate lyase [Fragaria x ananassa] |
GenBank | ACB12931.1 | 0 | 37 | 450 | 40 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
DDBJ | BAF43573.1 | 0 | 27 | 450 | 4 | 425 | pectate lyase [Prunus persica] |
RefSeq | XP_002297822.1 | 0 | 1 | 450 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 37 | 450 | 40 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 102 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 102 | 442 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 8e-17 | 171 | 367 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.0000000000001 | 205 | 344 | 147 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.000000000003 | 192 | 441 | 90 | 358 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |