Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.001G267300.1 |
Family | PL1 |
Protein Properties | Length: 406 Molecular Weight: 44410.8 Isoelectric Point: 6.54 |
Chromosome | Chromosome/Scaffold: 01 Start: 54442922 End: 54444678 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 119 | 324 | 0 |
IQDEPLWIIFKRDMVITLKEELVMNSYKTIDGRGASVHISGGPCITIHYVSNIIIHGINIHDCKPGGSTTIRDSPEHAGHWTPSDGDGVSIFNSKNIWVD HCTLSNCKDGLIDVIHGSTAVTISNNYMTHHDKVMLLGHSDEYTQDKDMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQ GNRFLA |
Full Sequence |
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Protein Sequence Length: 406 Download |
MDFSTFSIFH IFILPLLCPS LVSSSAVRDP ESVVAEVHKS IDASRRHLGY LSCGTGNPID 60 DCWRCDPNWE SNRQKLADCG IGFGKDAIGG KNGRIYVVTD AGDDDPVNPK PGTLRHAVIQ 120 DEPLWIIFKR DMVITLKEEL VMNSYKTIDG RGASVHISGG PCITIHYVSN IIIHGINIHD 180 CKPGGSTTIR DSPEHAGHWT PSDGDGVSIF NSKNIWVDHC TLSNCKDGLI DVIHGSTAVT 240 ISNNYMTHHD KVMLLGHSDE YTQDKDMQVT VAFNHFGEGL VQRMPRCRHG YFHVVNNDYT 300 HWEMYAIGGS ANPTINSQGN RFLAPDDGSK KEVTKHEDAP ESEWRNWNWR SEGDLMLNGA 360 FFRQTGGGAS STYARASSLS ARPSSLVGPI TATAGALSCK IGSHC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.008 | 151 | 252 | 104 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 9.0e-28 | 89 | 322 | 252 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 4.0e-74 | 137 | 322 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-81 | 131 | 326 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF63756.1 | 0 | 21 | 405 | 14 | 398 | AF243475_1 pectate lyase [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 19 | 405 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 3 | 405 | 1 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002318694.1 | 0 | 19 | 405 | 17 | 403 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526952.1 | 0 | 2 | 405 | 4 | 396 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 57 | 398 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-18 | 126 | 323 | 50 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000002 | 140 | 322 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000002 | 137 | 322 | 73 | 276 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |