Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.010G207200.2 |
Family | PL1 |
Protein Properties | Length: 455 Molecular Weight: 49565.8 Isoelectric Point: 6.7391 |
Chromosome | Chromosome/Scaffold: 10 Start: 57283723 End: 57288412 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 126 | 300 | 0 |
VIQDEPLWIVFSTNMVIKLKHELIFNSFKTIDGRGVNVHITGNGCLTLQRGRSDGDGISIFGSQKIWVDHCSLSYCTDGLVDAVMGSTGITISNSYFAHH DEVMLLGHDDRYLPDSGMQVTIAFNVFGVGLVQRMPRCRRGYIHVVNNDFTSWQMYAIGGSGNPTINSQGNRYSA |
Full Sequence |
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Protein Sequence Length: 455 Download |
MLPFTCILFM CILASVSRAT FNLSLPHQHP HPESVVLDVQ WSLNASLSRR QTLSENTKDQ 60 CRTGNPIDDC WRCDPNWFNN RQRLADCSIG FARGTLGGKG GRIYTVTDSS DHDTVNPKPG 120 TLRHAVIQDE PLWIVFSTNM VIKLKHELIF NSFKTIDGRG VNVHITGNGC LTLQRGRSDG 180 DGISIFGSQK IWVDHCSLSY CTDGLVDAVM GSTGITISNS YFAHHDEVML LGHDDRYLPD 240 SGMQVTIAFN VFGVGLVQRM PRCRRGYIHV VNNDFTSWQM YAIGGSGNPT INSQGNRYSA 300 PGDPSAKEVT KRVDTDEKDW TGWNWRTDGD IMVNGAYFVP SGAGVMTQYV KASSVEPKSA 360 TLVEQLTSNA GVFGETREET GSYSYPGYTG TTNAGSGGRG GSSGNDGDFF GMIFGSGAPP 420 LPPSRLIASI FLSFLIILFL HSTTHQGVLP LLLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 2.0e-25 | 78 | 296 | 247 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-52 | 145 | 298 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 8.0e-67 | 139 | 302 | 192 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ87025.1 | 0 | 22 | 432 | 24 | 488 | pectate lyase-like protein [Brassica napus] |
RefSeq | NP_191052.2 | 0 | 21 | 432 | 26 | 490 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
RefSeq | XP_002268818.1 | 0 | 1 | 420 | 1 | 465 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002316399.1 | 0 | 2 | 377 | 3 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002534016.1 | 0 | 1 | 423 | 1 | 465 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 372 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 372 | 2 | 344 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000000001 | 84 | 302 | 2 | 250 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 0.0000000000003 | 187 | 371 | 151 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 0.0000000000003 | 187 | 371 | 151 | 357 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |