Basic Information | |
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Species | Glycine max |
Cazyme ID | Glyma03g34260.1 |
Family | PL1 |
Protein Properties | Length: 471 Molecular Weight: 52122 Isoelectric Point: 5.6775 |
Chromosome | Chromosome/Scaffold: 03 Start: 41736529 End: 41740261 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 139 | 339 | 0 |
LWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQFISNVIIHNIHIHHCHPSGNTNVRSSPEHYGFRTESDGDGISIFGSKDIWIDHCTLS RCKDGLIDAVMGSTGITISNNMLSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTEWEMYAIGGSGEPTINSQGNRYM A |
Full Sequence |
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Protein Sequence Length: 471 Download |
MLLQTTCIFL LSVLLSSFSP LGTAMLNLTL PGAHPDPEAV AHEVHRKVNA SIARREMLSV 60 SEKDGSSCLT GNPIDDCWKC DPDWPNNRQR LADCVIGFGQ YAKGGKGGEF YVVTDSSDDD 120 PVNPKPGTLR YAVIQNEPLW IVFPSNMMIK LSQELIFNSY KTIDGRGADV HIVGGGCITL 180 QFISNVIIHN IHIHHCHPSG NTNVRSSPEH YGFRTESDGD GISIFGSKDI WIDHCTLSRC 240 KDGLIDAVMG STGITISNNM LSHHNEVMLL GHSDDYLPDS GMQVTIAFNH FGEKLVQRMP 300 RCRRGYIHVV NNDFTEWEMY AIGGSGEPTI NSQGNRYMAP ENPFAKEVTK RVDTQQSKWK 360 GWNWRSEGDI LLNGAFFVAS GEELEVKYEK AYSVQPKSAD RISFLTMSAG VLGNARDNNL 420 GMWSRGPADD TTESGMEYTD DMSTTATMLL SSFLLLFFLS YTILRLTVIL * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 1.0e-22 | 159 | 352 | 206 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 5.0e-59 | 153 | 337 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-68 | 146 | 340 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM61400.1 | 0 | 2 | 469 | 1 | 473 | pectate lyase-like protein [Arabidopsis thaliana] |
EMBL | CAB64222.1 | 0 | 24 | 469 | 4 | 454 | pectate lyase-like protein [Arabidopsis thaliana] |
RefSeq | NP_566979.1 | 0 | 1 | 469 | 1 | 474 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002265853.1 | 0 | 2 | 423 | 115 | 535 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002519460.1 | 0 | 22 | 470 | 20 | 483 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 72 | 412 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 104 | 339 | 23 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000003 | 162 | 314 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pe9_B | 0.00000000000001 | 162 | 410 | 90 | 357 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |