Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g68310.1 |
Family | GH10 |
Protein Properties | Length: 564 Molecular Weight: 63057.1 Isoelectric Point: 6.0861 |
Chromosome | Chromosome/Scaffold: 1 Start: 66834900 End: 66838412 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 217 | 480 | 0 |
QTAKDFPFGSAIASTILGNEAYQKWFVDRFNAAVFEDELKWYSTEPASGLLRFDVPDQMLAFVRSHRVMVRGHNIFWENQEATPRWVKGLSPEDLRSAVN TRIQSLMTRYRGEFAHWDVNNEMLHYNFYEQRLGPNATVEFFSVAQDADPLATLFMNEYNVIETCDDVSSTVDAYVARLKDLRAGGAVLEGIGLEGHFSK PNIPYMRAVLDKLATLGLPIWFTEIDINNKFDAQTQAVYLEQVLREAYSHPAVSGVMLWTALHQ |
Full Sequence |
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Protein Sequence Length: 564 Download |
MRRSHSFVSA LKHVVLFLVS WMVHCGNELV AAVPPDGWYD YSAYTDCRGQ PEPALYNGGI 60 LKYGNSDDPT GYHTTETGVL SPAFVVYNLN KTTMYTFSSW VRLEGSDSAL ITARLAPDNS 120 GTRCIGTVLA RNDCWSFLKG GFVLDWPTQT SVIFFQNADK TPMKITVARG SLQPFTTDQW 180 AMHQKDTIRK RRKRMATIHV ADPQGSRVVG ASVSVQQTAK DFPFGSAIAS TILGNEAYQK 240 WFVDRFNAAV FEDELKWYST EPASGLLRFD VPDQMLAFVR SHRVMVRGHN IFWENQEATP 300 RWVKGLSPED LRSAVNTRIQ SLMTRYRGEF AHWDVNNEML HYNFYEQRLG PNATVEFFSV 360 AQDADPLATL FMNEYNVIET CDDVSSTVDA YVARLKDLRA GGAVLEGIGL EGHFSKPNIP 420 YMRAVLDKLA TLGLPIWFTE IDINNKFDAQ TQAVYLEQVL REAYSHPAVS GVMLWTALHQ 480 NGCYQMCLTD WDLKNLPVGD VVDRLLQEWQ TGQAAGNTDA HGAYSFSGYL GEYVVTVSSG 540 NSSAQSTFSL SPGDETRHIT LHI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 5.0e-42 | 190 | 475 | 308 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 5.0e-62 | 219 | 475 | 273 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-76 | 255 | 502 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94920.1 | 0 | 13 | 563 | 7 | 563 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94921.1 | 0 | 13 | 563 | 7 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC74851.1 | 0 | 13 | 563 | 166 | 717 | hypothetical protein OsI_10717 [Oryza sativa Indica Group] |
RefSeq | NP_001140909.1 | 0 | 17 | 563 | 13 | 560 | hypothetical protein LOC100272986 [Zea mays] |
RefSeq | XP_002468186.1 | 0 | 17 | 563 | 13 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 4e-31 | 224 | 475 | 15 | 268 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3msg_B | 3e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3msg_A | 3e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3msd_B | 3e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 3msd_A | 3e-27 | 219 | 444 | 13 | 245 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |