Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi2g02330.1 |
Family | GH10 |
Protein Properties | Length: 593 Molecular Weight: 64830.9 Isoelectric Point: 6.4794 |
Chromosome | Chromosome/Scaffold: 2 Start: 1589020 End: 1591008 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 243 | 524 | 0 |
VLQVENSFPIGACISKSSIQNPSFVDFFAKHFDWAVLENELKWYYTEPAQGQVSYADADALIAFCDAHNKPVRGHCIFWAVENSVQQWVRALNPGQLRAA MESRLRSLVSRYSGRFPHYEVNNELLHGNFFANRLGDADVNAHMFRETAAIDATPALFVNDYNVESGNDPNATPEKYVALITDLQKRGAPVGGIGVQGHV THPIGDIICGALDKLAAMDLPVWITELDVSAADEAVRADDLEVVMREVFAHPAVEGVMLWGFMQGHMWRSHGQLVNQDGTLS |
Full Sequence |
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Protein Sequence Length: 593 Download |
MKLMADGGNG SEEQEAPILT MDLLEHGDCE EPHGGLAGWA SAGSCTLSAH HDPAPDTPPP 60 SLSATADDDD PDHHRRRKPS GRYILATGRA GEKDGLRRAI ARAPRPKITH RVSGWVGLAG 120 AEEDAGHAVH VEVRTEDGKR VGGGVVVPEP GKWGEIQGAF RVDDDAKHHH PRCVEVYVHG 180 PPAGVDIKLM DLRVCAVDRI ARLRHLRKKT DKVRKRDVVL KFNGRSSTDA ADTDLVKGAS 240 IRVLQVENSF PIGACISKSS IQNPSFVDFF AKHFDWAVLE NELKWYYTEP AQGQVSYADA 300 DALIAFCDAH NKPVRGHCIF WAVENSVQQW VRALNPGQLR AAMESRLRSL VSRYSGRFPH 360 YEVNNELLHG NFFANRLGDA DVNAHMFRET AAIDATPALF VNDYNVESGN DPNATPEKYV 420 ALITDLQKRG APVGGIGVQG HVTHPIGDII CGALDKLAAM DLPVWITELD VSAADEAVRA 480 DDLEVVMREV FAHPAVEGVM LWGFMQGHMW RSHGQLVNQD GTLSEAGRRF VGLRTEWTSH 540 ARGKLDGDGN FRFRGFHGRY VVELTTGGGA GQVRRAFDVS KGDQPLVLDM DL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-36 | 252 | 513 | 281 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 6.0e-72 | 283 | 530 | 269 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 5.0e-75 | 247 | 531 | 305 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84241.1 | 0 | 11 | 592 | 4 | 591 | unknown [Zea mays] |
GenBank | EAY72425.1 | 0 | 14 | 592 | 5 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
GenBank | EEE53821.1 | 0 | 31 | 592 | 21 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
RefSeq | NP_001147589.1 | 0 | 11 | 592 | 4 | 585 | endo-1,4-beta-xylanase [Zea mays] |
RefSeq | XP_002455242.1 | 0 | 24 | 592 | 23 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ta3_B | 2e-28 | 252 | 512 | 17 | 278 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1nq6_A | 2e-26 | 252 | 521 | 15 | 287 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0n_A | 7e-26 | 252 | 526 | 16 | 292 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0m_A | 7e-26 | 252 | 526 | 16 | 292 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v0l_A | 7e-26 | 252 | 526 | 16 | 292 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL874412 | 260 | 236 | 495 | 0 |
EG387260 | 231 | 236 | 466 | 0 |
FL875205 | 243 | 306 | 548 | 0 |
GO850973 | 330 | 170 | 499 | 0 |
DV482338 | 171 | 222 | 392 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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