Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00064807m |
Family | GH10 |
Protein Properties | Length: 357 Molecular Weight: 40052 Isoelectric Point: 6.3922 |
Chromosome | Chromosome/Scaffold: 0118852 Start: 2226 End: 3296 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 7 | 270 | 0 |
RSGFPLGSAMSAEILHNPAYQQWFTSRFTVTTFENEMKWYSTERVQGSEDYSVPDAMLRFARSHGIRVRGHNIFWDQPSQQPAWVQSLPYQQLRQATARR IKSVMSRYAGQVIAWDVVNENLHFNFFEGRFGGDASAAFYRQAHQMDGGALMSMNEFNTLEQPGDPNAVPGKYLGKLFQIKKFPGNTNDGRMAIGLEGHF TTPNIPYIRAALDTMSGAGVPIWLTEIDVAPGPNQAANLEKILREVYAHPAVHGIILWTAWHQR |
Full Sequence |
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Protein Sequence Length: 357 Download |
VRIEHVRSGF PLGSAMSAEI LHNPAYQQWF TSRFTVTTFE NEMKWYSTER VQGSEDYSVP 60 DAMLRFARSH GIRVRGHNIF WDQPSQQPAW VQSLPYQQLR QATARRIKSV MSRYAGQVIA 120 WDVVNENLHF NFFEGRFGGD ASAAFYRQAH QMDGGALMSM NEFNTLEQPG DPNAVPGKYL 180 GKLFQIKKFP GNTNDGRMAI GLEGHFTTPN IPYIRAALDT MSGAGVPIWL TEIDVAPGPN 240 QAANLEKILR EVYAHPAVHG IILWTAWHQR GCYVMCLTDN NFGNLPTGDV VDKLIREWQT 300 RAHAGVADAD GYYEAELFHG DYKVTVSHPV ANATVVQSLT VDRETTDAEN EYTIHV* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 4.0e-30 | 34 | 264 | 256 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-48 | 10 | 264 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 6.0e-74 | 43 | 291 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94510.1 | 0 | 1 | 356 | 226 | 579 | 1,4-beta-xylanase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN31540.1 | 0 | 1 | 356 | 221 | 575 | unknown [Zea mays] |
DDBJ | BAH92032.1 | 0 | 1 | 356 | 59 | 412 | Os03g0201901 [Oryza sativa Japonica Group] |
GenBank | EEC74705.1 | 0 | 1 | 356 | 226 | 579 | hypothetical protein OsI_10421 [Oryza sativa Indica Group] |
RefSeq | XP_002465685.1 | 0 | 1 | 356 | 230 | 584 | hypothetical protein SORBIDRAFT_01g043720 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 1e-31 | 12 | 291 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1v6y_A | 9e-25 | 7 | 264 | 11 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 1xas_A | 9e-25 | 6 | 264 | 10 | 266 | A Chain A, Crystal Structure, At 2.6 Angstroms Resolution, Of The Streptomyces Lividans Xylanase A, A Member Of The F Family Of Beta-1,4-D-Glycanses |
PDB | 1e0v_A | 1e-24 | 6 | 264 | 10 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 2e-24 | 6 | 264 | 10 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL870567 | 262 | 96 | 357 | 0 |
FL854687 | 251 | 97 | 347 | 0 |
FL914612 | 229 | 1 | 229 | 0 |
JG785503 | 257 | 82 | 330 | 0 |
FL906755 | 243 | 115 | 349 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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