Basic Information | |
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Species | Panicum virgatum |
Cazyme ID | Pavirv00046655m |
Family | GH10 |
Protein Properties | Length: 323 Molecular Weight: 36554.1 Isoelectric Point: 4.7486 |
Chromosome | Chromosome/Scaffold: 0131263 Start: 1 End: 1152 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 3 | 235 | 0 |
RFNAAVFEDELKWYSTEPTSGLLRFDVPDQMLAFVRSHRVMVRGHNIFWENQDATPRWVKNLTSPDDLRAAVNARIQGLMTRYRGEFAHWDVNNEMLHYN FYEQRLGPNASMEFFSVAQDADPLATLFMNEYNVIETCDDPFSTVDTYAAKLRELRAGGAILEGIGLEGHFSRTNIPLMRAILDKLATLGLPIWFTEIDI SNKFDAQTQAAYLEQVLREAYAHPAVSGVMLWT |
Full Sequence |
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Protein Sequence Length: 323 Download |
VDRFNAAVFE DELKWYSTEP TSGLLRFDVP DQMLAFVRSH RVMVRGHNIF WENQDATPRW 60 VKNLTSPDDL RAAVNARIQG LMTRYRGEFA HWDVNNEMLH YNFYEQRLGP NASMEFFSVA 120 QDADPLATLF MNEYNVIETC DDPFSTVDTY AAKLRELRAG GAILEGIGLE GHFSRTNIPL 180 MRAILDKLAT LGLPIWFTEI DISNKFDAQT QAAYLEQVLR EAYAHPAVSG VMLWTALHPS 240 GCYQMCLTDW GLNNLPTGDV VDRLLNEWRT LQAGGQTDAH GAYSFSGYLG EYILTVTYNN 300 RTTQSTFSLS PGDETRHINV QM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.0008 | 256 | 322 | 74 | + Carboxypeptidase regulatory-like domain. | ||
COG3693 | XynA | 3.0e-32 | 4 | 234 | 249 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-50 | 4 | 234 | 245 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-70 | 13 | 261 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94921.1 | 0 | 1 | 322 | 238 | 558 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94922.1 | 0 | 1 | 322 | 150 | 470 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001049529.1 | 0 | 1 | 322 | 81 | 401 | Os03g0243700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001140909.1 | 0 | 1 | 322 | 240 | 560 | hypothetical protein LOC100272986 [Zea mays] |
RefSeq | XP_002468186.1 | 0 | 1 | 322 | 240 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-25 | 3 | 234 | 62 | 305 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-25 | 3 | 234 | 62 | 305 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 3msg_B | 3e-25 | 1 | 203 | 35 | 245 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 3msg_A | 3e-25 | 1 | 203 | 35 | 245 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 3msd_B | 3e-25 | 1 | 203 | 35 | 245 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV530577 | 246 | 1 | 246 | 0 |
FL769186 | 238 | 39 | 276 | 0 |
FF353690 | 243 | 81 | 323 | 0 |
DV174405 | 218 | 106 | 323 | 0 |
FL769186 | 26 | 273 | 298 | 0.0000004 |
Sequence Alignments (This image is cropped. Click for full image.) |
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