Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si039641m |
Family | GH10 |
Protein Properties | Length: 567 Molecular Weight: 62920.4 Isoelectric Point: 9.1115 |
Chromosome | Chromosome/Scaffold: 9 Start: 23946196 End: 23948450 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 219 | 480 | 0 |
AGFPFGNTMTKEILNLPAYEKWFTSRFTVATFENEMKWYSTEWNQNQEDYRIPDAMLKLTNKYGIRVRGHNVFWDDQNSQIRWVRPMNTDQLKAAMQKRL KSVVSRYAGKVIHWDVVNENLHFNFFEGKFGPTASAQIYNQVGQIDHNAILFMNEFNTLEQPGDPNPVPSKYVAKMNQIRSYPGNGGLKLGVGLESHFST PNIPYMRSALDTLAKMNLPMWLTEVDVVKGPNQVKFLEQVLREGYGHPNVNGMIMWAAWHAN |
Full Sequence |
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Protein Sequence Length: 567 Download |
CVVHSVEYDH TASIEASLCL PDPMKPLYNG GIIQNGAFNS GLMGWSTHRN IKAGVRSSPS 60 GNKFAVVQGA GGTLSISGNV LPSHSVYQRV RMQRDTHYSL SAWLQVPAGS AHVKAVVKAP 120 NGERVIAGAV VARSGCWSML KGGMTTYSSG HGEIYFESDA PVDIWVDSVS LQPFSFDEWD 180 AHARRSANTT RRSTIRLVAR GADHKPMANA TVIIELLRAG FPFGNTMTKE ILNLPAYEKW 240 FTSRFTVATF ENEMKWYSTE WNQNQEDYRI PDAMLKLTNK YGIRVRGHNV FWDDQNSQIR 300 WVRPMNTDQL KAAMQKRLKS VVSRYAGKVI HWDVVNENLH FNFFEGKFGP TASAQIYNQV 360 GQIDHNAILF MNEFNTLEQP GDPNPVPSKY VAKMNQIRSY PGNGGLKLGV GLESHFSTPN 420 IPYMRSALDT LAKMNLPMWL TEVDVVKGPN QVKFLEQVLR EGYGHPNVNG MIMWAAWHAN 480 GCYVMCLTDN SFKNLPVGNV VDKLIAEWKT HRTAATTDKN GIVELNLPHG EYNFTVTHPS 540 VKGTAIHTMT VDAASSASDH TITVKA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 4.0e-24 | 218 | 449 | 245 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-36 | 215 | 474 | 280 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 8.0e-68 | 254 | 501 | 272 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM08566.1 | 0 | 24 | 565 | 1 | 540 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
GenBank | EEC66792.1 | 0 | 2 | 565 | 19 | 577 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
GenBank | EEE50812.1 | 0 | 24 | 565 | 1 | 532 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
RefSeq | NP_001064415.1 | 0 | 2 | 565 | 19 | 577 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002461545.1 | 0 | 19 | 566 | 11 | 567 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 3e-21 | 223 | 501 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1xyz_B | 4e-19 | 235 | 475 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 4e-19 | 235 | 475 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1v0n_A | 1e-17 | 208 | 449 | 1 | 243 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1v0m_A | 1e-17 | 208 | 449 | 1 | 243 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL833802 | 242 | 210 | 451 | 0 |
FL788487 | 247 | 287 | 533 | 0 |
FL746832 | 231 | 197 | 426 | 0 |
FL816029 | 260 | 163 | 422 | 0 |
FL746832 | 29 | 420 | 448 | 0.0002 |
Sequence Alignments (This image is cropped. Click for full image.) |
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