Basic Information | |
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Species | Citrus clementina |
Cazyme ID | Ciclev10030219m |
Family | GH10 |
Protein Properties | Length: 497 Molecular Weight: 56362 Isoelectric Point: 6.6256 |
Chromosome | Chromosome/Scaffold: 8 Start: 1153485 End: 1155681 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 183 | 463 | 0 |
VSKDFPLGSAIASTILGNLPYQKWFVKRFNAAVFENELKWYATEAEQGKVNYTVADQMMEFVRANKLIVRGHNIFWENPKYNPTWVRNLTGFQLQSAVNS RIQSLMNKYKEEFIHWDVSNEILHFDFYEQRLGPKAALHFFQTAHQSDPLATLFMNEYNVVETCSDVNSMVDSYISRLRELRRSGVSTDGIGLQGHFTVP NLPLMRAIIDKMTTLKLPIWLTEVDISSKLSKEKQAVYLEQVLREGFSHPSVSGIMLWAALHPNGCYQMCLTDNNLQNLPA |
Full Sequence |
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Protein Sequence Length: 497 Download |
RPLYDFTAYT ECKESPEKPL YDGGMLRKQS LKNPSWVAYS ETSFYTPAFI LHNLTQGTIY 60 CFSIWVKIEG ANSADIRASL ETENELYDCV GSVTAKQGCW SFLKGGFVLD SSSNLSLLFF 120 QNSDDRDINI AVASASLQPF TEHQWRFNQQ YIINTERKRA VTMHVTNGHG DILQGAVIKI 180 KQVSKDFPLG SAIASTILGN LPYQKWFVKR FNAAVFENEL KWYATEAEQG KVNYTVADQM 240 MEFVRANKLI VRGHNIFWEN PKYNPTWVRN LTGFQLQSAV NSRIQSLMNK YKEEFIHWDV 300 SNEILHFDFY EQRLGPKAAL HFFQTAHQSD PLATLFMNEY NVVETCSDVN SMVDSYISRL 360 RELRRSGVST DGIGLQGHFT VPNLPLMRAI IDKMTTLKLP IWLTEVDISS KLSKEKQAVY 420 LEQVLREGFS HPSVSGIMLW AALHPNGCYQ MCLTDNNLQN LPAGDVVDKL LKECQTGEVT 480 GHTDAHGSYS FYGFLG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 8.0e-40 | 175 | 409 | 250 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 4.0e-58 | 179 | 440 | 279 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-75 | 220 | 467 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94920.1 | 0 | 4 | 496 | 39 | 531 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI37893.1 | 0 | 2 | 496 | 102 | 593 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 2 | 496 | 32 | 530 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 2 | 496 | 26 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002534153.1 | 0 | 61 | 496 | 6 | 441 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 1e-27 | 189 | 441 | 16 | 276 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_B | 4e-27 | 189 | 419 | 16 | 250 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_A | 4e-27 | 189 | 419 | 16 | 250 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3j_A | 4e-27 | 189 | 419 | 16 | 250 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3i_A | 4e-27 | 189 | 419 | 16 | 250 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES803339 | 253 | 174 | 426 | 0 |
GR953916 | 292 | 163 | 454 | 0 |
GO498667 | 216 | 262 | 477 | 0 |
DY024035 | 257 | 243 | 496 | 0 |
DV530577 | 250 | 203 | 452 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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