Basic Information | |
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Species | Brachypodium distachyon |
Cazyme ID | Bradi1g71050.1 |
Family | GH10 |
Protein Properties | Length: 502 Molecular Weight: 56131.6 Isoelectric Point: 6.3773 |
Chromosome | Chromosome/Scaffold: 1 Start: 69168374 End: 69170305 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 244 | 414 | 1e-33 |
SLKEAMAKRMKSVVSRYAGKLIHWDVVNENLHFSFFEDKLGKDASGEVFKEVAKLDDKPILFMNEYNTIEEPNDGAPLPTKYLAKLKQIQSYPGNSKLKY GIGLESHFAIPNIPYVRGSLDTLAQAKVPIWLTEIDVIKGPKQVEYLEELMREGFAHPGVKGIVLWAAWHA |
Full Sequence |
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Protein Sequence Length: 502 Download |
MQCEKEPPKP LYGGGILTDA EAPAPVATGG KKLLMAKTTS APVKGSTLKF ELEKDTHYAL 60 SAWLQFSKST GDVRAVLVTP DGKFNTAGMI VVQSGCWTML KGGATSFSAG KGELFFETNV 120 TAELMADSMA LQPFTFEEWK LHRDESITKE RKKKVKITVQ GSDGKELPDA ELSLERVAKG 180 FPLGNAMTKE ILDMPEYEKW FTSRFTVATM ENEMKWDSTE YDKGHELYEI PDKMLALAEK 240 YKISLKEAMA KRMKSVVSRY AGKLIHWDVV NENLHFSFFE DKLGKDASGE VFKEVAKLDD 300 KPILFMNEYN TIEEPNDGAP LPTKYLAKLK QIQSYPGNSK LKYGIGLESH FAIPNIPYVR 360 GSLDTLAQAK VPIWLTEIDV IKGPKQVEYL EELMREGFAH PGVKGIVLWA AWHAKGCYVM 420 CLTDNKFKNL PVGDVVDKLI AEWKDVPKDA KTDDKGVFEA ELFHGEYNVT VKHKSLKELF 480 METVDLDSKS EATIKAKGKE Y* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 5.0e-21 | 184 | 409 | 271 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-32 | 173 | 409 | 284 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-53 | 214 | 436 | 270 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94508.1 | 0 | 1 | 501 | 35 | 557 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ABF94509.1 | 0 | 2 | 497 | 9 | 526 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | EEC74704.1 | 0 | 1 | 501 | 35 | 557 | hypothetical protein OsI_10420 [Oryza sativa Indica Group] |
RefSeq | NP_001049300.1 | 0 | 1 | 497 | 35 | 553 | Os03g0201800 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465686.1 | 0 | 1 | 496 | 67 | 572 | hypothetical protein SORBIDRAFT_01g043730 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ta3_B | 0.00000000000008 | 183 | 409 | 17 | 268 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
PDB | 1nq6_A | 0.00000000000008 | 183 | 436 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1xyz_B | 0.0000000000003 | 178 | 410 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 0.0000000000003 | 178 | 410 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1tux_A | 0.0000000000004 | 205 | 440 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL788487 | 224 | 245 | 468 | 0 |
FL844459 | 241 | 100 | 315 | 0 |
EX576553 | 212 | 255 | 466 | 0 |
FL785687 | 179 | 319 | 496 | 0 |
AW399852 | 191 | 245 | 435 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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