Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si001255m |
Family | GH10 |
Protein Properties | Length: 482 Molecular Weight: 53474.1 Isoelectric Point: 6.1949 |
Chromosome | Chromosome/Scaffold: 5 Start: 27429511 End: 27431575 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 130 | 411 | 0 |
IARDFPFGSAISKSILGNKPYQDWFNKRFNAAVFENELKWYATEPSPGKEDYTVADQLLQFVQSNDVMARGHNIFWEDPKYTPAWVKNLTGSELRAAVAG RIESLLSRYKGDFVHWDVSNEMLHFDFYENRLGGNATAEFFSTAKRADPLATLFLNDFNVVEVCDDLSSSADSYVSRLRQLADGGVTFEGIGLEGHFGKP NIPYVRAVLDKLGTLRLPIWLTEIDISSSFDQKTQAAYLEEVLREGFAHPSVDGIMLWTAMGRNASCYQMCLTDANFTNLPA |
Full Sequence |
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Protein Sequence Length: 482 Download |
MVNASLLSPG WVKIEGPATA HVKAKILTLE NAASKCIGTA LVRNDCWSFL KGGFALNSSS 60 QTSVLYFQTA SPNASTISIR SASLQPFSPD QWNQHREDRI QLIRKRFVNV HVSNANGSRV 120 VGANVSVHQI ARDFPFGSAI SKSILGNKPY QDWFNKRFNA AVFENELKWY ATEPSPGKED 180 YTVADQLLQF VQSNDVMARG HNIFWEDPKY TPAWVKNLTG SELRAAVAGR IESLLSRYKG 240 DFVHWDVSNE MLHFDFYENR LGGNATAEFF STAKRADPLA TLFLNDFNVV EVCDDLSSSA 300 DSYVSRLRQL ADGGVTFEGI GLEGHFGKPN IPYVRAVLDK LGTLRLPIWL TEIDISSSFD 360 QKTQAAYLEE VLREGFAHPS VDGIMLWTAM GRNASCYQMC LTDANFTNLP AGDVVDRLLE 420 EWQTREVLGA TNDRGSFNFS AFLGEYKLSV TYQNLTSEGT FSLARSDDTK HINVRLQGPA 480 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-33 | 129 | 387 | 283 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 6.0e-59 | 130 | 387 | 274 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 4.0e-74 | 167 | 415 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC78941.1 | 0 | 11 | 476 | 57 | 522 | hypothetical protein OsI_19385 [Oryza sativa Indica Group] |
GenBank | EEE63172.1 | 0 | 11 | 476 | 57 | 522 | hypothetical protein OsJ_17981 [Oryza sativa Japonica Group] |
RefSeq | NP_001055145.1 | 0 | 10 | 476 | 10 | 476 | Os05g0304900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001152556.1 | 0 | 11 | 481 | 99 | 571 | hydrolase, hydrolyzing O-glycosyl compounds [Zea mays] |
RefSeq | XP_002446197.1 | 0 | 11 | 481 | 100 | 570 | hypothetical protein SORBIDRAFT_06g003350 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 2e-29 | 136 | 415 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1e0v_A | 4e-29 | 136 | 387 | 16 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 5e-29 | 136 | 387 | 16 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 5e-29 | 136 | 387 | 16 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0l_A | 5e-29 | 136 | 387 | 16 | 266 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DV522212 | 262 | 13 | 274 | 0 |
DR965570 | 272 | 40 | 311 | 0 |
FF353430 | 240 | 120 | 358 | 0 |
FL758005 | 207 | 275 | 480 | 0 |
GR953916 | 293 | 110 | 402 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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