| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si039948m |
| Family | GH10 |
| Protein Properties | Length: 547 Molecular Weight: 60769.4 Isoelectric Point: 9.0881 |
| Chromosome | Chromosome/Scaffold: 9 Start: 23918901 End: 23920742 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 202 | 461 | 0 |
| GFPFGNAITKEILDLPAYEKWFSSRFTVATFENEMKWYGTEWAQNQEDYRVADAMLKLMQKHGIKVRGHNVFWDDQNSQMKWVMPLNLAQLKAAMQKRLK SVVSRYAGKVIHWDVVNENLHFNFFETKLGPNASAQIYNQVGQLDRNAILFMNEFNTLEQPGDPNPVPAKYVAKMNQIRSYPGNGGLKLGVGLESHFSTP NLPYIRSALDTLAKLKLPMWLTEVDVVKSPNQVKFLEQVLREGFAHPNVDGIVMWAAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 547 Download |
| CLRDPIKPLY NGGVIQNSEF NSGLMGWSTY RNIKAGVSSS PSGNKFAVVH NAGSFLSSSG 60 RFLPSHSVYQ RVQMQGDMHY LLSAWLQVSN GTAHVKAVVK APSGERVIAG AIVAQSGCWS 120 MLKGGMTTYS SGHGEIYFES EAPVDILVDS VSLQPFTFDE WDAHARRSAD KARRRTVRLV 180 AKGAGDKPMA HANVSIELLR LGFPFGNAIT KEILDLPAYE KWFSSRFTVA TFENEMKWYG 240 TEWAQNQEDY RVADAMLKLM QKHGIKVRGH NVFWDDQNSQ MKWVMPLNLA QLKAAMQKRL 300 KSVVSRYAGK VIHWDVVNEN LHFNFFETKL GPNASAQIYN QVGQLDRNAI LFMNEFNTLE 360 QPGDPNPVPA KYVAKMNQIR SYPGNGGLKL GVGLESHFST PNLPYIRSAL DTLAKLKLPM 420 WLTEVDVVKS PNQVKFLEQV LREGFAHPNV DGIVMWAAWH AKGCYVMCLT DNSFKNLPVG 480 DLVDKLIAEW KTHRASATTD DKGAVELDLP LGEYKFTVSH PSLKDAAVHT MAVDTSSSEH 540 TINIKS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 6.0e-27 | 206 | 427 | 233 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-43 | 203 | 456 | 274 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 3.0e-73 | 236 | 483 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM08566.1 | 0 | 6 | 545 | 1 | 540 | AC092749_19 Putative 1,4-beta-xylanase [Oryza sativa Japonica Group] |
| GenBank | EEC66792.1 | 0 | 1 | 545 | 33 | 577 | hypothetical protein OsI_33191 [Oryza sativa Indica Group] |
| GenBank | EEE50812.1 | 0 | 6 | 545 | 1 | 532 | hypothetical protein OsJ_31205 [Oryza sativa Japonica Group] |
| RefSeq | NP_001064415.1 | 0 | 1 | 545 | 33 | 577 | Os10g0351700 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002461545.1 | 0 | 1 | 546 | 11 | 567 | hypothetical protein SORBIDRAFT_02g004490 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 4e-26 | 205 | 483 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyz_B | 1e-20 | 217 | 457 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 1e-20 | 217 | 457 | 53 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1v0n_A | 9e-20 | 190 | 456 | 1 | 266 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1v0m_A | 9e-20 | 190 | 456 | 1 | 266 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FL816029 | 260 | 145 | 404 | 0 |
| FL788487 | 246 | 269 | 514 | 0 |
| FL833802 | 242 | 192 | 433 | 0 |
| FL746832 | 236 | 174 | 408 | 0 |
| FL746832 | 29 | 402 | 430 | 0.0001 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
