Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si025026m |
Family | GH10 |
Protein Properties | Length: 564 Molecular Weight: 60870.6 Isoelectric Point: 5.3759 |
Chromosome | Chromosome/Scaffold: 3 Start: 22973608 End: 22977166 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 214 | 504 | 0 |
VQLDNAFPLGSCINCEVIKIPAFVDFFTTHFDWAVFENELKWYWTEAQRGQLNYADADRLLDFCDRAGKPVRGHCIFWAVDGDVQQWIKDIPAGDRDQLA AAVESRIRGLLGRYAGRFPHYDVNNEMLHGRFFRDRLGDAVAPLMFREAARLDPGAALFVNDYNVECGNDPNATPEKYVELIAELQRGGAQVGGIGLQGH VSNPVGEVICDALDKLSAATGLPVWITELDVCEPDEALRADDLEVVLREAYAHPAVEGVVFWGFMQGHMWRPDAALVNADGTVNGAGQRFV |
Full Sequence |
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Protein Sequence Length: 564 Download |
MACTHQDVVF EVNAVGWAPC GAGTALSLHH EDDPARLPTA AAVGQHGHEP SGRYVLAAGR 60 AGEDDGLCQA IAPGALKPRV TYRVAGWISV AGQAAAAEEE DGAGHPVRVS IRVGGDGDGS 120 RVVDGGAVCA EPGRWAEIKG AFRLREESPR GAAVVRVHGA PAGVDVKVMD LRIIATDRKA 180 RFSHLKDKTD KVRKRDVLLR CASAASAGAS VRVVQLDNAF PLGSCINCEV IKIPAFVDFF 240 TTHFDWAVFE NELKWYWTEA QRGQLNYADA DRLLDFCDRA GKPVRGHCIF WAVDGDVQQW 300 IKDIPAGDRD QLAAAVESRI RGLLGRYAGR FPHYDVNNEM LHGRFFRDRL GDAVAPLMFR 360 EAARLDPGAA LFVNDYNVEC GNDPNATPEK YVELIAELQR GGAQVGGIGL QGHVSNPVGE 420 VICDALDKLS AATGLPVWIT ELDVCEPDEA LRADDLEVVL REAYAHPAVE GVVFWGFMQG 480 HMWRPDAALV NADGTVNGAG QRFVELRNEW TTDARGRLDG DGQFRFRGFH GTYVAQVTTA 540 AGKMLKAFTV DKGDAALVLD MDV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 3.0e-29 | 250 | 485 | 254 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-64 | 218 | 505 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-71 | 253 | 503 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY72426.1 | 0 | 1 | 563 | 1 | 557 | hypothetical protein OsI_00280 [Oryza sativa Indica Group] |
GenBank | EAY97529.1 | 0 | 1 | 563 | 1 | 581 | hypothetical protein OsI_19457 [Oryza sativa Indica Group] |
RefSeq | NP_001041947.1 | 0 | 1 | 563 | 1 | 557 | Os01g0134900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001055187.1 | 0 | 1 | 563 | 1 | 581 | Os05g0319900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002455241.1 | 0 | 1 | 563 | 1 | 564 | hypothetical protein SORBIDRAFT_03g006950 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 2e-29 | 250 | 497 | 46 | 289 | A Chain A, Rice Bglu1 Beta-Glucosidase, A Plant ExoglucanaseBETA-Glucosidase |
PDB | 1i1w_A | 2e-29 | 250 | 497 | 46 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 3e-29 | 250 | 497 | 46 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1k6a_A | 9e-29 | 250 | 497 | 46 | 289 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
PDB | 2bnj_A | 1e-28 | 250 | 497 | 46 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL860597 | 242 | 273 | 514 | 0 |
FL874412 | 258 | 211 | 468 | 0 |
HO159988 | 227 | 211 | 437 | 0 |
HO149443 | 229 | 211 | 439 | 0 |
GT807565 | 234 | 331 | 564 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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