Basic Information | |
---|---|
Species | Citrus sinensis |
Cazyme ID | orange1.1g008838m |
Family | GH10 |
Protein Properties | Length: 552 Molecular Weight: 61998.1 Isoelectric Point: 7.7079 |
Chromosome | Chromosome/Scaffold: 00084 Start: 397433 End: 399510 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH10 | 197 | 457 | 0 |
VTQIKSDFPFGCGMNNYILTSTEYQNWFASRFKYTTFTNQMKWYSTEKIQGEENYTIADAMLQFCEKNGISVRGHNIFWDNSKQQPSWVKKLSPEELREA AAKRINSVTSRYAGKLIAWDVVNENLHFRFFEDNLGENASAEFYRIAHQLDPNTIMFLNEYNTIELAADKESNAVNYKKKIDEILSYPGNAGMSLGIGLQ GHFSSDQPDIAYMRSVLDILGSTGLPIWLTEVDVDIGPNQSQYLEEILREAYAHPAVKGII |
Full Sequence |
---|
Protein Sequence Length: 552 Download |
MWKRTSINQC LAEPRRAHYG GGLIVNPEFN RGTEGWTAFG QAAIREATSE EGNKYIVAHS 60 RTNPLDSFSQ KVQLEKGKLY SFSAWIQVSR GSDTVAAVFK TSDGKLIDAG KVLAKHGCWS 120 LLKGGLAANF TSLVEILFES KNAEMEIWAD SVSLQPFTKE QWRSHQDKSI NKERKRKVRF 180 QLTSANKTAL EGAVVSVTQI KSDFPFGCGM NNYILTSTEY QNWFASRFKY TTFTNQMKWY 240 STEKIQGEEN YTIADAMLQF CEKNGISVRG HNIFWDNSKQ QPSWVKKLSP EELREAAAKR 300 INSVTSRYAG KLIAWDVVNE NLHFRFFEDN LGENASAEFY RIAHQLDPNT IMFLNEYNTI 360 ELAADKESNA VNYKKKIDEI LSYPGNAGMS LGIGLQGHFS SDQPDIAYMR SVLDILGSTG 420 LPIWLTEVDV DIGPNQSQYL EEILREAYAH PAVKGIISFS GPAIAGFKVM PLADKDFKNT 480 PAGDVVDKLL AEWKSRALEA TTDMKGFFEF SLFHGEYNLT VKHSVTHALT SISFKVTKHL 540 PQRTTNVQIV D* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-5 | 21 | 95 | 80 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-39 | 199 | 448 | 261 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-57 | 198 | 456 | 277 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 7.0e-84 | 237 | 486 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 2 | 549 | 32 | 579 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 9 | 549 | 33 | 573 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 8 | 550 | 3 | 541 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 4 | 538 | 2 | 536 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 9 | 551 | 22 | 564 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1tux_A | 2e-25 | 206 | 443 | 18 | 252 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1x_A | 6e-25 | 206 | 443 | 18 | 252 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1i1w_A | 6e-25 | 206 | 443 | 18 | 252 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 1e-24 | 206 | 443 | 18 | 252 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1k6a_A | 4e-24 | 206 | 443 | 18 | 252 | A Chain A, Structural Studies On The Mobility In The Active Site Of The Thermoascus Aurantiacus Xylanase I |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
CV887102 | 266 | 287 | 552 | 0 |
CV887101 | 231 | 1 | 231 | 0 |
ES830806 | 292 | 86 | 375 | 0 |
DV141191 | 250 | 195 | 444 | 0 |
ES830806 | 51 | 371 | 421 | 0.035 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|