Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si000821m |
Family | GH10 |
Protein Properties | Length: 575 Molecular Weight: 62920.1 Isoelectric Point: 6.2354 |
Chromosome | Chromosome/Scaffold: 5 Start: 7871294 End: 7873350 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 227 | 502 | 0 |
VIQVQNSFPIGSCITKAGIQNPEYVDFFTKHFDWAVLENELKWYYTEAVQGQVSYADADELINFCDQHGKPVRGHCIFWAVENAVQPWVRALNGDQLRAA VEARLRGLVSRYAGRFPHYEVNNEMLHGAFFRQRLGDDVDAHMFRETAAIDPAPALFVNDYNVESANDPNATPEKYVALVTDLQRRGAPVGGIGIQGHVT HPVGDIICDALDKLAVTGLPVWVTELDVSAADEAVRADDLEIVLREAYAHPAVEGVMLWGFMQGHMWRSHGQLVNA |
Full Sequence |
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Protein Sequence Length: 575 Download |
MTTYLGMNLV EDRCDAEDSL ASWAPSGSCT LSAHAEDPAP DSLPPALAAT ADADDSDEEA 60 VRCARKPSGR YVLAAHRKDE KDGLCRAISR LPKPWVTYRV AGWVGVDAAG SGEGGSHAVH 120 VEVRVDGHRP VGGGIVVVEP GKWGEIKGSF RVDDDEPPRC AKVYVHGPPA GVDIKVMDLQ 180 VCAVNKIPRL RHLRKKADRV RKRDVILKVS DRAEDGVSSV AGAHIRVIQV QNSFPIGSCI 240 TKAGIQNPEY VDFFTKHFDW AVLENELKWY YTEAVQGQVS YADADELINF CDQHGKPVRG 300 HCIFWAVENA VQPWVRALNG DQLRAAVEAR LRGLVSRYAG RFPHYEVNNE MLHGAFFRQR 360 LGDDVDAHMF RETAAIDPAP ALFVNDYNVE SANDPNATPE KYVALVTDLQ RRGAPVGGIG 420 IQGHVTHPVG DIICDALDKL AVTGLPVWVT ELDVSAADEA VRADDLEIVL REAYAHPAVE 480 GVMLWGFMQG HMWRSHGQLV NADGMLTEAG SRFAGLRREW TSHAKGKVDA NGNFKFRGFH 540 GTYEVLLTTA AGEVKKQRFD VKKGDAPLVL DMNF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 1.0e-37 | 256 | 496 | 262 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-75 | 232 | 514 | 303 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-76 | 267 | 513 | 268 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84241.1 | 0 | 2 | 574 | 9 | 591 | unknown [Zea mays] |
GenBank | EAY72425.1 | 0 | 2 | 574 | 7 | 567 | hypothetical protein OsI_00279 [Oryza sativa Indica Group] |
GenBank | EEE53821.1 | 0 | 25 | 574 | 39 | 575 | hypothetical protein OsJ_00270 [Oryza sativa Japonica Group] |
RefSeq | NP_001147589.1 | 0 | 2 | 574 | 9 | 585 | endo-1,4-beta-xylanase [Zea mays] |
RefSeq | XP_002455242.1 | 0 | 6 | 574 | 20 | 594 | hypothetical protein SORBIDRAFT_03g006980 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1e0v_A | 2e-31 | 236 | 504 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0n_A | 2e-31 | 236 | 504 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0m_A | 2e-31 | 236 | 504 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0l_A | 2e-31 | 236 | 504 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
PDB | 1v0k_A | 2e-31 | 236 | 504 | 16 | 287 | A Chain A, Xylanase 10a From Sreptomyces Lividans. Cellobiosyl-Enzyme Intermediate At 1.7 A |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL874412 | 262 | 217 | 478 | 0 |
FL875205 | 242 | 290 | 531 | 0 |
EG387260 | 247 | 208 | 449 | 0 |
GO850973 | 328 | 155 | 482 | 0 |
CA254203 | 190 | 233 | 422 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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