Basic Information | |
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Species | Capsella rubella |
Cazyme ID | Carubv10013514m |
Family | CBM43 |
Protein Properties | Length: 500 Molecular Weight: 53227.5 Isoelectric Point: 6.0299 |
Chromosome | Chromosome/Scaffold: 3 Start: 4509199 End: 4512288 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 363 | 444 | 4.4e-31 |
CVAKADAEDDKLVDGLNWACGQGQANCAAIQPGHPCYLPDNIKSHASFAYNDYYQKMKSAGGTCDFSGTAITTTRDPSYKTC | |||
GH17 | 26 | 346 | 0 |
IGVNIGTDLTNMPSPSEVVELLNSQQITHVRLYDANSHMLKAFANSSIEVMVGVTNEEILKIGRFPSAAAAWVNKNVAAYIPSTNITAIAVGSEVLTTNP HVAPILASALHNIHKALVASNLNFKVKVSSPMSMGIMPKPFPPSTSTFSPSWNTTVYQLLQFLENTDSFFMLNAYPYYGYTTANGIFPLDYALFKQLSPV KQIVDPNTLLHYNSMFDAMVDAAYYSMGAMNFSKIPVVVTETGWPSAGGSGEAAATLANAETFNTNLVKRVLNNSGPPSQPGIPINTYIYELYSEDKRAG PVSEKNWGILFPNGTSVYPLS |
Full Sequence |
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Protein Sequence Length: 500 Download |
MQLPRWFAEA FLLLITILAS SDAAFIGVNI GTDLTNMPSP SEVVELLNSQ QITHVRLYDA 60 NSHMLKAFAN SSIEVMVGVT NEEILKIGRF PSAAAAWVNK NVAAYIPSTN ITAIAVGSEV 120 LTTNPHVAPI LASALHNIHK ALVASNLNFK VKVSSPMSMG IMPKPFPPST STFSPSWNTT 180 VYQLLQFLEN TDSFFMLNAY PYYGYTTANG IFPLDYALFK QLSPVKQIVD PNTLLHYNSM 240 FDAMVDAAYY SMGAMNFSKI PVVVTETGWP SAGGSGEAAA TLANAETFNT NLVKRVLNNS 300 GPPSQPGIPI NTYIYELYSE DKRAGPVSEK NWGILFPNGT SVYPLSLSGG ANSASPNGSS 360 LFCVAKADAE DDKLVDGLNW ACGQGQANCA AIQPGHPCYL PDNIKSHASF AYNDYYQKMK 420 SAGGTCDFSG TAITTTRDPS YKTCAYTGSL TANATGGNFP PTALGPVSPL GGNANTLITS 480 SSYHLPLLAA LALTLLQLL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 2.0e-6 | 105 | 335 | 240 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 2.0e-20 | 363 | 433 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-36 | 362 | 446 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 1.0e-67 | 26 | 343 | 318 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB01763.1 | 0 | 37 | 487 | 1 | 450 | beta-1,3-glucanase-like protein [Arabidopsis thaliana] |
DDBJ | BAH57260.1 | 0 | 1 | 440 | 1 | 440 | AT3G13560 [Arabidopsis thaliana] |
EMBL | CAN72077.1 | 0 | 27 | 450 | 27 | 449 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_187965.1 | 0 | 1 | 487 | 1 | 486 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002283548.1 | 0 | 27 | 446 | 27 | 445 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 26 | 347 | 1 | 312 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0 | 26 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0 | 26 | 348 | 3 | 315 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0 | 26 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |
PDB | 3ur7_A | 0 | 26 | 348 | 3 | 315 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |