Basic Information | |
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Species | Gossypium raimondii |
Cazyme ID | Gorai.008G082600.1 |
Family | CBM43 |
Protein Properties | Length: 477 Molecular Weight: 52290.5 Isoelectric Point: 6.4256 |
Chromosome | Chromosome/Scaffold: 08 Start: 16787008 End: 16789252 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH17 | 25 | 170 | 2e-23 |
ESIEYLRLYDTTPEVIHALPHGDVPIAVAVNGNVLREVSSSVLKAESWVRLHALAHFPAAKITTILVGDTILCQNGKGEEDSLGFLLPSLKNIYHSLTRW GLEKDIKVSAVFSSDCLMQNSVVFTDDLGKKVVKSLLEFFQNTNST | |||
CBM43 | 330 | 409 | 9.2e-32 |
WCVAKPSVPTETLQEAMDYACGEGGADCKELMPDGSCFYPDTIVAHASYAYNSYWQKTKRNGGTCNFGGTAMIINADPSN |
Full Sequence |
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Protein Sequence Length: 477 Download |
MLKMELMIIC LFFLCFLGLT GAGQESIEYL RLYDTTPEVI HALPHGDVPI AVAVNGNVLR 60 EVSSSVLKAE SWVRLHALAH FPAAKITTIL VGDTILCQNG KGEEDSLGFL LPSLKNIYHS 120 LTRWGLEKDI KVSAVFSSDC LMQNSVVFTD DLGKKVVKSL LEFFQNTNST YSIIAPPNLS 180 SSLHETLVLL SSHLDFMKRF GSFELRKVNV VFPSQQPKKP ISRKLSMMDS KFERPFPDRP 240 SPLPQTAPST GISAPANVAK TPHPPQYPIA SLPPISFPVD SPPPFSFPIA PELPPPFVPA 300 SSPSGFHLPP CNPAYDTAPA PETVVVQKLW CVAKPSVPTE TLQEAMDYAC GEGGADCKEL 360 MPDGSCFYPD TIVAHASYAY NSYWQKTKRN GGTCNFGGTA MIINADPSNL THTLFTLKFK 420 LYCLFNYNMV SCLFQVSLSV GLFSAEEWRM LGLFEYNVGC VGSDCKVECL VFTLYS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 2.0e-12 | 27 | 169 | 147 | + Glycosyl hydrolases family 17. | ||
pfam07983 | X8 | 6.0e-25 | 329 | 401 | 82 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-39 | 329 | 409 | 81 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI33700.1 | 0 | 1 | 410 | 1 | 350 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36295.1 | 0 | 1 | 237 | 1 | 235 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_201547.1 | 0 | 4 | 417 | 1 | 379 | glycosyl hydrolase family protein 17 [Arabidopsis thaliana] |
RefSeq | XP_002279597.1 | 0 | 1 | 410 | 1 | 406 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002525263.1 | 0 | 1 | 408 | 1 | 413 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000001 | 330 | 408 | 13 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2cyg_A | 0.000000001 | 25 | 141 | 25 | 136 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_B | 0.000002 | 25 | 162 | 27 | 160 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur8_A | 0.000002 | 25 | 162 | 27 | 160 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 3ur7_B | 0.000002 | 25 | 162 | 27 | 160 | A Chain A, Higher-density Crystal Structure Of Potato Endo-1,3-beta-glucanase |