Basic Information | |
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Species | Ricinus communis |
Cazyme ID | 30042.m000467 |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 41912.7 Isoelectric Point: 9.2063 |
Chromosome | Chromosome/Scaffold: 30042 Start: 31662 End: 33407 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 382 | 0 |
KQACGSIKPATVYVPSGRFFLKNVEFQGPCKSNAILFRIEGTLFAPSDYRVIGNAGYWLYFKHVSGVTVSGGILDGQGPGLWSCKSSGKNCPTGAASLGF SNSENIVISGVTSLNSQFFHMVINGCQNVKIQGVTVSASGNSPNTDGIHVQLSSGVTILNSRIRTGDDCISIGPGTINMWIEKIACGPGHGISIGSLGND LKEPGVQNVTVKTVIFTGTTNGVRIKSWARPSSGFARNIIFQDVLMTNVQNPIVIDQNYCPDNNNCPGQQSGVKVSDIRYQDIHGTSATKVAVKFDCSKK NPCTKIKLQDVKLTYKNQPADASCNNADGT |
Full Sequence |
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Protein Sequence Length: 393 Download |
MAKRQFSCSL LIAFLIFLFT SSLATAARFN VLNYGAKPDG RTDSTKAFLA SWKQACGSIK 60 PATVYVPSGR FFLKNVEFQG PCKSNAILFR IEGTLFAPSD YRVIGNAGYW LYFKHVSGVT 120 VSGGILDGQG PGLWSCKSSG KNCPTGAASL GFSNSENIVI SGVTSLNSQF FHMVINGCQN 180 VKIQGVTVSA SGNSPNTDGI HVQLSSGVTI LNSRIRTGDD CISIGPGTIN MWIEKIACGP 240 GHGISIGSLG NDLKEPGVQN VTVKTVIFTG TTNGVRIKSW ARPSSGFARN IIFQDVLMTN 300 VQNPIVIDQN YCPDNNNCPG QQSGVKVSDI RYQDIHGTSA TKVAVKFDCS KKNPCTKIKL 360 QDVKLTYKNQ PADASCNNAD GTSSGFVQPS SCL |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-94 | 12 | 389 | 388 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 5.0e-94 | 56 | 379 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 4.0e-97 | 29 | 393 | 373 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-114 | 29 | 392 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-155 | 1 | 393 | 394 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABV32553.1 | 0 | 1 | 393 | 1 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 1 | 393 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 1 | 393 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 4 | 393 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-21 | 124 | 366 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 9e-17 | 56 | 376 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 9e-17 | 56 | 376 | 45 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.000000000000005 | 122 | 376 | 80 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.000000000000005 | 122 | 376 | 80 | 339 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |