Basic Information | |
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Species | Mimulus guttatus |
Cazyme ID | mgv1a007768m |
Family | GH28 |
Protein Properties | Length: 397 Molecular Weight: 42114.3 Isoelectric Point: 8.8524 |
Chromosome | Chromosome/Scaffold: 112 Start: 123309 End: 126029 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 382 | 0 |
SLACESKTPSIIYVPKGSFLIKHLNFKGPCRNKGITFRVDGILVAPTNYNDIGDANYWLLFEWADGVSINGGTLDGRGVALWACKKNGKNCPSGVTTLAF SNSKNVAINGLTSRNSQMFHIVINGCENVKLQGVNVLASGNSPNTDGIHVQLSKGISILQSKISTGDDCVSIGPGTTNLLIEKVHCGPGHGVSIGSLGKD FDEAGVQNVTVKNVTLSSTQNGLRIKTWAKPSKGFVRNILFQHAIMTNVENPIVIDQNYCPSNKNCPGQVSGVKISDVTYHDIQGTSATGIAVKFDCSKA SPCQGIKLESVHLKYKNQPARASCLNAV |
Full Sequence |
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Protein Sequence Length: 397 Download |
MAKIATILFI QLMVIFLSIC QETLAIEITT YNILKLGANP NGKGDSTNSL SKAWSLACES 60 KTPSIIYVPK GSFLIKHLNF KGPCRNKGIT FRVDGILVAP TNYNDIGDAN YWLLFEWADG 120 VSINGGTLDG RGVALWACKK NGKNCPSGVT TLAFSNSKNV AINGLTSRNS QMFHIVINGC 180 ENVKLQGVNV LASGNSPNTD GIHVQLSKGI SILQSKISTG DDCVSIGPGT TNLLIEKVHC 240 GPGHGVSIGS LGKDFDEAGV QNVTVKNVTL SSTQNGLRIK TWAKPSKGFV RNILFQHAIM 300 TNVENPIVID QNYCPSNKNC PGQVSGVKIS DVTYHDIQGT SATGIAVKFD CSKASPCQGI 360 KLESVHLKYK NQPARASCLN AVGTTVGPIE PSSCLS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-88 | 58 | 381 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-90 | 29 | 391 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-93 | 37 | 396 | 368 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-105 | 29 | 394 | 373 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-141 | 31 | 396 | 367 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 9 | 395 | 7 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72324.1 | 0 | 9 | 395 | 7 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 9 | 395 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 9 | 395 | 7 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002529090.1 | 0 | 3 | 395 | 5 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-21 | 126 | 367 | 117 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 5e-17 | 30 | 367 | 20 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.000000000000003 | 124 | 378 | 76 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.000000000000003 | 124 | 378 | 76 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.000000000000003 | 124 | 378 | 76 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |