Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_013_00893.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41619.5 Isoelectric Point: 7.0195 |
Chromosome | Chromosome/Scaffold: 13 Start: 5882589 End: 5884051 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 377 | 0 |
NVACSSLTPTTIYVPRKRYFLSQAIFLGPCLNSGITFRIEGILAAPNYKTMASIENWVTFDKVEGVTVIGGFLDARGSSLWACKDTNKDCPDGASTLSIF SSKDITIQNLTLLDAKLYHVVIHSSENVIVQGVRIYAPQESPNTDGIHVQNSLNVSILDTGIKTGDDCVSIGPGTKNLLIQRVACGPGHGISIGSLGKGP VEEGVENVAVRNVVFTGTQNGLRIKSWGRPSTGYVKGVVFKQVLMNDVQYPIIIDQNYCPQNEGCPGQNSGIQISDVSYSAIKGTSATKVAMKFDCSAKN PCKGISVQDIKLTYQGDSAESFCQNVHG |
Full Sequence |
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Protein Sequence Length: 390 Download |
MTMLRNVALL FLFFISLLSS IHALDINVAD FGAKGDGKTD ASPAFLEAWN VACSSLTPTT 60 IYVPRKRYFL SQAIFLGPCL NSGITFRIEG ILAAPNYKTM ASIENWVTFD KVEGVTVIGG 120 FLDARGSSLW ACKDTNKDCP DGASTLSIFS SKDITIQNLT LLDAKLYHVV IHSSENVIVQ 180 GVRIYAPQES PNTDGIHVQN SLNVSILDTG IKTGDDCVSI GPGTKNLLIQ RVACGPGHGI 240 SIGSLGKGPV EEGVENVAVR NVVFTGTQNG LRIKSWGRPS TGYVKGVVFK QVLMNDVQYP 300 IIIDQNYCPQ NEGCPGQNSG IQISDVSYSA IKGTSATKVA MKFDCSAKNP CKGISVQDIK 360 LTYQGDSAES FCQNVHGVTG SYVSPPSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-85 | 26 | 385 | 368 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-85 | 53 | 388 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-94 | 28 | 389 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-94 | 26 | 388 | 370 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-129 | 27 | 389 | 365 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 389 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 389 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
EMBL | CAN78679.1 | 0 | 23 | 389 | 10 | 376 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002263164.1 | 0 | 8 | 389 | 14 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275367.1 | 0 | 8 | 389 | 14 | 393 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-22 | 146 | 362 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 4e-19 | 27 | 377 | 22 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 2iq7_G | 0.000000000000003 | 122 | 375 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000003 | 122 | 375 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.000000000000003 | 122 | 375 | 80 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |