Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_023_00138.1 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 39761.4 Isoelectric Point: 5.6741 |
Chromosome | Chromosome/Scaffold: 23 Start: 3064170 End: 3065668 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 37 | 366 | 0 |
LACNSVSSATITVPSGRYLLKNIVFAGECKNTEITIRIEGTLVAPSDYNVIGESEDWIKFEDVNGVSIYGGTLDGQGTGLWACKSGSGKNCPNGATSLKF GNSKNIAVQGLSSINSQKFHIHISDCENVKVQGVTITASGNSPNTDGIHVASSTAVTIMKANIKTGDDCISIGPGTTNLWIENIACGPGHGISIGSLGQE LNEQGVQNVTVKTVSFTGTENGFRIKTWPRPSNGFVKNILFQDGTMNNAENPIIINQNYCPGDENCSNQVSGVAISQVTYKGIHGTSSTQVAVNFDCSTK KPCSGIILEEVDLTYQNKAAQSSCTSADGS |
Full Sequence |
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Protein Sequence Length: 378 Download |
MFFSISRASV EYNVVQLGAK SDGKTDCTKS FQQAWTLACN SVSSATITVP SGRYLLKNIV 60 FAGECKNTEI TIRIEGTLVA PSDYNVIGES EDWIKFEDVN GVSIYGGTLD GQGTGLWACK 120 SGSGKNCPNG ATSLKFGNSK NIAVQGLSSI NSQKFHIHIS DCENVKVQGV TITASGNSPN 180 TDGIHVASST AVTIMKANIK TGDDCISIGP GTTNLWIENI ACGPGHGISI GSLGQELNEQ 240 GVQNVTVKTV SFTGTENGFR IKTWPRPSNG FVKNILFQDG TMNNAENPII INQNYCPGDE 300 NCSNQVSGVA ISQVTYKGIH GTSSTQVAVN FDCSTKKPCS GIILEEVDLT YQNKAAQSSC 360 TSADGSAYGV VQPSSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 39 | 357 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-91 | 7 | 373 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-97 | 14 | 377 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 5.0e-105 | 8 | 376 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-134 | 6 | 377 | 373 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 10 | 377 | 26 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABC72325.1 | 0 | 10 | 377 | 26 | 393 | endo-polygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 10 | 377 | 26 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 10 | 377 | 26 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002529090.1 | 0 | 1 | 377 | 18 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-21 | 104 | 350 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-16 | 38 | 322 | 17 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 38 | 322 | 17 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-16 | 38 | 322 | 17 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-16 | 38 | 322 | 17 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 317 | 10 | 326 | 0 |
JG578064 | 274 | 13 | 286 | 0 |
JZ191937 | 300 | 78 | 377 | 0 |
FC899369 | 296 | 10 | 305 | 0 |
DY272214 | 332 | 10 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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