Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009606 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 42143.2 Isoelectric Point: 5.9866 |
Chromosome | Chromosome/Scaffold: 169 Start: 64096 End: 65648 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 373 | 0 |
CAACKSPTPAKVVVPPGEYLTGVTKLLGPCNAPIELEINGIIKAPKAVAGEDWLLIESINDIRVFGTGTVDGQGAECWEKKIKDDRSPNIRFQRINNGLV EGLTSKDSKFFHMSTLGAKNLTFRHLHFIAPAESRNTDGIHVSRSSFITIIDTIFETGDDCVSIADDIDTVTVKNVKCGPGHGISIGSLGKYDTEKPVKN IWVQNCTISNSDNGVRIKSWPDRFATSLTGVRFEDITLDNVANPIIVDQLYCPNNECNGKLGPSKVQISDITFKNVKGTSSTKEIIQLVCSKTLPCENIQ MTDIDISFKGAVGEAVCENVKP |
Full Sequence |
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Protein Sequence Length: 392 Download |
MKGSSSIVAL LLAMVMYGRT SAHDQAIFDV MKFGAVCDGA TDNSQAFVKA WCAACKSPTP 60 AKVVVPPGEY LTGVTKLLGP CNAPIELEIN GIIKAPKAVA GEDWLLIESI NDIRVFGTGT 120 VDGQGAECWE KKIKDDRSPN IRFQRINNGL VEGLTSKDSK FFHMSTLGAK NLTFRHLHFI 180 APAESRNTDG IHVSRSSFIT IIDTIFETGD DCVSIADDID TVTVKNVKCG PGHGISIGSL 240 GKYDTEKPVK NIWVQNCTIS NSDNGVRIKS WPDRFATSLT GVRFEDITLD NVANPIIVDQ 300 LYCPNNECNG KLGPSKVQIS DITFKNVKGT SSTKEIIQLV CSKTLPCENI QMTDIDISFK 360 GAVGEAVCEN VKPVLSGVIN PPGCGDAKQE L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-71 | 11 | 381 | 385 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-82 | 1 | 384 | 394 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-87 | 19 | 384 | 384 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-95 | 55 | 372 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-104 | 23 | 384 | 377 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 4 | 384 | 7 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 4 | 384 | 7 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 4 | 384 | 7 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 4 | 384 | 7 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 4 | 384 | 7 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-20 | 115 | 339 | 113 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 1e-16 | 61 | 371 | 28 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 1e-16 | 61 | 371 | 28 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 1e-16 | 61 | 371 | 28 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 8e-16 | 29 | 357 | 22 | 338 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |