Basic Information | |
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Species | Aquilegia coerulea |
Cazyme ID | Aquca_016_00178.1 |
Family | GH28 |
Protein Properties | Length: 391 Molecular Weight: 41555.4 Isoelectric Point: 7.9622 |
Chromosome | Chromosome/Scaffold: 16 Start: 2803750 End: 2805195 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 50 | 379 | 0 |
GAACGSVASATIYVPSGRYLIKNVEFKGPCKNTDITFRIDGSLVAPSDYNVIGDLENWISFQWVTGVSIYGGTLDGRGIALWACKLANKKCPSGATSLSF TNSKDIVINGLKSLNSQMFHIVINGCENVNMQKLMITASGNSPNTDGIHVQLSTGVTIMNSGIKTGDDCISIGPGTRNLWIEHVACGPGHGISIGSLAKD LDEQGVQNVTVKTIVFTGTQNGMRIKAWGRPSNGFVKGVLFQHAIMKNVQNPLVIDQNYCPRNEGCPEQVSGIKISEVAYEDIQGTSATQVAVKFDCSTK NPCKQIKLENVKLTYQNQPAVSSCTNADGS |
Full Sequence |
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Protein Sequence Length: 391 Download |
MSNTKVYIVL SILFIIVDSS VGSTVFNVVN LGAKPDGKSD STQSFVKAWG AACGSVASAT 60 IYVPSGRYLI KNVEFKGPCK NTDITFRIDG SLVAPSDYNV IGDLENWISF QWVTGVSIYG 120 GTLDGRGIAL WACKLANKKC PSGATSLSFT NSKDIVINGL KSLNSQMFHI VINGCENVNM 180 QKLMITASGN SPNTDGIHVQ LSTGVTIMNS GIKTGDDCIS IGPGTRNLWI EHVACGPGHG 240 ISIGSLAKDL DEQGVQNVTV KTIVFTGTQN GMRIKAWGRP SNGFVKGVLF QHAIMKNVQN 300 PLVIDQNYCP RNEGCPEQVS GIKISEVAYE DIQGTSATQV AVKFDCSTKN PCKQIKLENV 360 KLTYQNQPAV SSCTNADGSV HGVVEPAGCF * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 7.0e-87 | 53 | 376 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-90 | 24 | 386 | 370 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-93 | 25 | 390 | 374 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-105 | 22 | 389 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 1.0e-154 | 4 | 390 | 392 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 1 | 390 | 1 | 393 | endopolygalacturonase [Prunus persica] |
GenBank | ABD33834.1 | 0 | 1 | 390 | 1 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
GenBank | ABV32553.1 | 0 | 1 | 390 | 1 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 1 | 390 | 1 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 1 | 390 | 1 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-26 | 114 | 363 | 109 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 0.0000000000001 | 51 | 363 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.0000000000001 | 51 | 363 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.0000000000001 | 51 | 363 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.0000000000001 | 51 | 363 | 16 | 320 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |