Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10003001 |
Family | GH28 |
Protein Properties | Length: 733 Molecular Weight: 81096.3 Isoelectric Point: 6.3793 |
Chromosome | Chromosome/Scaffold: 599 Start: 408 End: 3833 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 394 | 723 | 0 |
TAACESPTPACVVVPPGNYRLGIMTLKGPCKSPITFQVDGVLLAPPEIEGDSWVTFNYMEHFTLTGKGTFDGIGRDAWTKNDCHKNKKCKLLPFNLRFNF IKQARIEGVTSKDSKSFNVNVLGCENITFSNFRVLAPDESPNTDGIHMGRSIGVNIVDSIFETGDDCISVGDGIEQLRIENVKCGPGHGISIGSLGGSPE EKPVVGVFVKNCTLTNTTNGVRIKTKPTSFPGIVTDIHFEDIVMNNVWNPIIIDQVYCPHNLCANKLPSKVALSKVFFKNIRGTSRDEHVITMNCSPEVP CADVEVQDVDLTYSGPRGPAQAVCTNVKPR |
Full Sequence |
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Protein Sequence Length: 733 Download |
MVRPPCCGEE DKMMVKKGPW TAEEDSKLVD YIANKKGRHA NWKLLPKLAG LDRCGKSCRL 60 RWTNYLRPGI KRGGFDDEEE RLVIDLHKTL GNKWSKIATH LPGRTDNEIK NYYNTHIRRK 120 LLRMGIDPQT HKPRTDHLHQ QQDIANQIVN FSQLIGAASQ LSNMMNIDSP SSTLNILENL 180 LVAASSTMQQ QIVTPFVLQQ LLLNNNQTIS HSLPLLLRGQ DSAPTGTLSL QDPLLLLARV 240 LNPVENLATT DYHKPVYIDD DKDKSTSENV VKNLIVKKEP MMPELVSWEA SPETSSSSLV 300 HNNHQENDHC SKFPDQTPTL FDSPVASIDI DNQLEAWERL LMMDDDFTGG EGFFSSTWTD 360 GAQDNVLTLF DINKYGAVCD GKTDSVDAFT KAFTAACESP TPACVVVPPG NYRLGIMTLK 420 GPCKSPITFQ VDGVLLAPPE IEGDSWVTFN YMEHFTLTGK GTFDGIGRDA WTKNDCHKNK 480 KCKLLPFNLR FNFIKQARIE GVTSKDSKSF NVNVLGCENI TFSNFRVLAP DESPNTDGIH 540 MGRSIGVNIV DSIFETGDDC ISVGDGIEQL RIENVKCGPG HGISIGSLGG SPEEKPVVGV 600 FVKNCTLTNT TNGVRIKTKP TSFPGIVTDI HFEDIVMNNV WNPIIIDQVY CPHNLCANKL 660 PSKVALSKVF FKNIRGTSRD EHVITMNCSP EVPCADVEVQ DVDLTYSGPR GPAQAVCTNV 720 KPRIIGKMNP TC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-61 | 338 | 732 | 404 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 4.0e-67 | 369 | 704 | 346 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-76 | 369 | 731 | 370 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-96 | 397 | 721 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-107 | 347 | 730 | 388 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0003677 | DNA binding |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 359 | 731 | 22 | 391 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 359 | 731 | 22 | 391 | polygalacturonase [Salix gilgiana] |
EMBL | CBI28390.1 | 0 | 369 | 727 | 27 | 388 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002274125.1 | 0 | 369 | 730 | 27 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 359 | 731 | 22 | 391 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1a5j_A | 3e-27 | 17 | 121 | 7 | 108 | A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures |
PDB | 1msf_C | 3e-26 | 14 | 121 | 1 | 105 | A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures |
PDB | 1mse_C | 3e-26 | 14 | 121 | 1 | 105 | C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices |
PDB | 1gv2_A | 1e-25 | 17 | 121 | 4 | 105 | A Chain A, Crystal Structure Of C-Myb R2r3 |
PDB | 1h8a_C | 7e-25 | 15 | 121 | 25 | 128 | C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU617067 | 290 | 362 | 648 | 0 |
EY196848 | 267 | 463 | 729 | 0 |
EX164190 | 267 | 463 | 729 | 0 |
EC987202 | 280 | 368 | 643 | 0 |
EC941822 | 275 | 368 | 638 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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