Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00634.1 |
Family | GH28 |
Protein Properties | Length: 390 Molecular Weight: 41700.4 Isoelectric Point: 7.813 |
Chromosome | Chromosome/Scaffold: 6 Start: 8343783 End: 8345754 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 373 | 0 |
WSKACNSRGTAVVLIPSGTYLLGPVRLAGPCNGAIEFQIKGDLKAFNSPQLGIDHWITFRYMEDLTITGGGVLDGQGAAAWPSNDCKKNPNCQALPVTMR LDFVSNARIHDVTSLNSKNFHFNIFSCKNITFERVTIKAPDESPNTDGIHMAFSSNVFIRDSDIGTGDDCISLGPGSKNINMTDITCGPGHGISIGSLGG TPNEPAVAKVFLGSSTFTGTTNALRIKTRAPSFQGAVKDITFQDINVKNADNPIIIEQQYCPSKTCSSQSSQVKISNVKFSNIRGTSSSSVAININCSPA VPCTGIELRDIDLKYDGKS |
Full Sequence |
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Protein Sequence Length: 390 Download |
MEWRLTFPTA SLLMLMLMSS LAKNQAQARN VFNIKDFGAV DDGNTDGSKA LSDAWSKACN 60 SRGTAVVLIP SGTYLLGPVR LAGPCNGAIE FQIKGDLKAF NSPQLGIDHW ITFRYMEDLT 120 ITGGGVLDGQ GAAAWPSNDC KKNPNCQALP VTMRLDFVSN ARIHDVTSLN SKNFHFNIFS 180 CKNITFERVT IKAPDESPNT DGIHMAFSSN VFIRDSDIGT GDDCISLGPG SKNINMTDIT 240 CGPGHGISIG SLGGTPNEPA VAKVFLGSST FTGTTNALRI KTRAPSFQGA VKDITFQDIN 300 VKNADNPIII EQQYCPSKTC SSQSSQVKIS NVKFSNIRGT SSSSVAININ CSPAVPCTGI 360 ELRDIDLKYD GKSIICYSPL IKFTASAKE* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 2.0e-81 | 28 | 370 | 351 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-85 | 22 | 367 | 357 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-87 | 27 | 368 | 349 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-106 | 59 | 376 | 318 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 5.0e-118 | 32 | 369 | 344 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 25 | 371 | 24 | 368 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 25 | 371 | 24 | 368 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 25 | 371 | 24 | 368 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002273801.1 | 0 | 1 | 369 | 1 | 368 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 13 | 371 | 15 | 368 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-19 | 57 | 314 | 31 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 117 | 340 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 117 | 340 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 117 | 340 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 117 | 340 | 68 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |