Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.007G144500.1 |
Family | GH28 |
Protein Properties | Length: 389 Molecular Weight: 41768.4 Isoelectric Point: 9.1607 |
Chromosome | Chromosome/Scaffold: 07 Start: 15418938 End: 15420785 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 49 | 376 | 0 |
EQACRSTKPTTIYVPPSKFLLPKVAFRGPCKNNATSIRIDGTLVAPSDYRVLGEQWIFFENVNGVSIFGGILDGRGIGLWTCKNSSKNCPTGATSLGFTK SKNIVIMGLTSLNSQMFHIVINGCQKVRMQGLRISASYRSPNTDGIHVQLSDGVTILNTKIKTGDDCVSIGAGTTDLRIENVVCGPGHGISIGSLGKDLE EPGVQNVTVKNVTLTDSQNGLRIKSWGRPSNGFAKDILFQHVVMTNVQNPIVIDQNYCPDNKDCPGQASGIKISNVTYKDIHGTSATQVAVKFDCSKKHP CTGIRLEDVKLTYRNRLAYASCRNVDGT |
Full Sequence |
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Protein Sequence Length: 389 Download |
MEKADDKYGS HPSFKQGQSA SGGKHNVLDY GAKPDGRTDS SKAFLATWEQ ACRSTKPTTI 60 YVPPSKFLLP KVAFRGPCKN NATSIRIDGT LVAPSDYRVL GEQWIFFENV NGVSIFGGIL 120 DGRGIGLWTC KNSSKNCPTG ATSLGFTKSK NIVIMGLTSL NSQMFHIVIN GCQKVRMQGL 180 RISASYRSPN TDGIHVQLSD GVTILNTKIK TGDDCVSIGA GTTDLRIENV VCGPGHGISI 240 GSLGKDLEEP GVQNVTVKNV TLTDSQNGLR IKSWGRPSNG FAKDILFQHV VMTNVQNPIV 300 IDQNYCPDNK DCPGQASGIK ISNVTYKDIH GTSATQVAVK FDCSKKHPCT GIRLEDVKLT 360 YRNRLAYASC RNVDGTASGS SVQPQSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-90 | 26 | 385 | 370 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-92 | 52 | 378 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-98 | 27 | 388 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-104 | 26 | 384 | 367 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-136 | 26 | 388 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC64184.1 | 0 | 25 | 388 | 28 | 393 | endopolygalacturonase [Prunus persica] |
RefSeq | XP_002309718.1 | 0 | 20 | 388 | 23 | 392 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529089.1 | 0 | 20 | 388 | 24 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529090.1 | 0 | 20 | 388 | 24 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529091.1 | 0 | 13 | 388 | 16 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 144 | 360 | 154 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-16 | 26 | 369 | 22 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1hg8_A | 0.000000000000002 | 117 | 360 | 78 | 332 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000000004 | 117 | 339 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000004 | 117 | 339 | 77 | 301 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY281549 | 315 | 25 | 336 | 0 |
JZ191937 | 300 | 91 | 388 | 0 |
JZ194028 | 288 | 85 | 370 | 0 |
JZ192826 | 286 | 89 | 372 | 0 |
JZ193571 | 293 | 17 | 307 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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