Basic Information | |
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Species | Linum usitatissimum |
Cazyme ID | Lus10009605 |
Family | GH28 |
Protein Properties | Length: 599 Molecular Weight: 64756.9 Isoelectric Point: 8.1356 |
Chromosome | Chromosome/Scaffold: 169 Start: 56896 End: 59786 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 259 | 580 | 0 |
CAACKSPTPAKVVVPPGEYLTGVTKLLGPCNAPIELEINGIIKAPKAVAGEDWLLIESINDIRVFGTGTVDGQGAECWEKKIKDDRSPNIRFQRINNGLV EGLTSKDSKFFHMSTLGAKNLTFRHLHFIAPAESRNTDGIHVSRSSFITIIDTIFETGDDCVSIADDIDTVTVKNVKCGPGHGISIGSLGKYDTEKPVKN IWVQNCTISNSDNGVRIKSWPDRFATSLTGVRFEDITLDNVANPIIVDQLYCPNNECKGKLGPSKVQISDITFKNVKGTSSTKEIIQLVCSKTLPCENIQ MTDIDISFKGAVGEAVCENVKP |
Full Sequence |
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Protein Sequence Length: 599 Download |
MAPRPSNLVL TILNTLTLLA GLALFATGIY LSVTSSSSAP HCQTFLRNSL LILGSFVLLV 60 SILGLLGSSR RNNVFLWLYT VLLRLLVVGA VGFTVFMLVV TKQHHGGATV GDFSGWMRHH 120 FAKGHNWDVV RSCLVEGQVC NVGSGRKARN STLMVGCCKP PPGCTPENAD ATMAATGNKE 180 KQGAPGNEEC GKWSSDPKKM CYNCERCKAG FLSEVRKQWR AAGVALLCFV VFMMVVLCMA 240 WCAINNNKFD SEAFVKAWCA ACKSPTPAKV VVPPGEYLTG VTKLLGPCNA PIELEINGII 300 KAPKAVAGED WLLIESINDI RVFGTGTVDG QGAECWEKKI KDDRSPNIRF QRINNGLVEG 360 LTSKDSKFFH MSTLGAKNLT FRHLHFIAPA ESRNTDGIHV SRSSFITIID TIFETGDDCV 420 SIADDIDTVT VKNVKCGPGH GISIGSLGKY DTEKPVKNIW VQNCTISNSD NGVRIKSWPD 480 RFATSLTGVR FEDITLDNVA NPIIVDQLYC PNNECKGKLG PSKVQISDIT FKNVKGTSST 540 KEIIQLVCSK TLPCENIQMT DIDISFKGAV GEAVCENVKP VLSGVINPPG CGDAKQEL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 5.0e-63 | 250 | 588 | 353 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 5.0e-71 | 253 | 591 | 349 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-78 | 250 | 591 | 360 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 262 | 579 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 7.0e-95 | 250 | 591 | 357 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 251 | 591 | 43 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 251 | 591 | 43 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 251 | 591 | 43 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 251 | 591 | 43 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002274096.1 | 0 | 251 | 591 | 43 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-20 | 322 | 546 | 113 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-16 | 268 | 578 | 28 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-16 | 268 | 578 | 28 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-16 | 268 | 578 | 28 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0000000000008 | 328 | 578 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |