Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.008G010700.1 |
Family | GH28 |
Protein Properties | Length: 370 Molecular Weight: 38357.2 Isoelectric Point: 8.4791 |
Chromosome | Chromosome/Scaffold: 08 Start: 591114 End: 592848 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 27 | 358 | 0 |
AWSQACASTKPATLYVPKGIFSLSQVIFQGPCKNNAILVSVAGSLVAPSDYGLIGGAKNWLVFEHVNGVTLSGGTLDGQGAGLWSCKKSGKSCPSGATSL EFSNSNNIVITGLTSLNSQMFHIVINACQNVKVKGVRVSAAGNSPNTDGIHVSSSTSVTILNSRIGTGDDCVSIGPGTSNLWIENVACGPGHGISIGSLG QDVQEAGVQNVTVKTTTFTGTENGVRIKSWGRPSNGFARNILFQHAVMNNVQNPIIIDQNYCPGNKNCPGQASGVQISDVTYQDIHGSSAKEIAVKFDCS KKYPCTGIKLEDINLTYQNQPAEASCTNARGA |
Full Sequence |
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Protein Sequence Length: 370 Download |
RSAKYSVLSY GAKPDGKTDS TKAFAAAWSQ ACASTKPATL YVPKGIFSLS QVIFQGPCKN 60 NAILVSVAGS LVAPSDYGLI GGAKNWLVFE HVNGVTLSGG TLDGQGAGLW SCKKSGKSCP 120 SGATSLEFSN SNNIVITGLT SLNSQMFHIV INACQNVKVK GVRVSAAGNS PNTDGIHVSS 180 STSVTILNSR IGTGDDCVSI GPGTSNLWIE NVACGPGHGI SIGSLGQDVQ EAGVQNVTVK 240 TTTFTGTENG VRIKSWGRPS NGFARNILFQ HAVMNNVQNP IIIDQNYCPG NKNCPGQASG 300 VQISDVTYQD IHGSSAKEIA VKFDCSKKYP CTGIKLEDIN LTYQNQPAEA SCTNARGAAS 360 GLVQPTSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 7.0e-75 | 7 | 369 | 371 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-77 | 6 | 365 | 367 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 7.0e-83 | 34 | 360 | 329 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-93 | 5 | 368 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 4.0e-116 | 2 | 369 | 369 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309716.1 | 0 | 1 | 369 | 23 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002310385.1 | 0 | 2 | 369 | 30 | 397 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331621.1 | 0 | 1 | 369 | 28 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331659.1 | 0 | 1 | 369 | 20 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331662.1 | 0 | 1 | 369 | 20 | 389 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-20 | 100 | 342 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 5e-16 | 90 | 352 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 5e-16 | 90 | 352 | 95 | 362 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 2iq7_G | 0.000000000000005 | 91 | 316 | 71 | 294 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.000000000000005 | 91 | 316 | 71 | 294 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 71 | 369 | 0 |
DT512918 | 265 | 106 | 370 | 0 |
JZ194028 | 289 | 64 | 352 | 0 |
JZ192826 | 286 | 69 | 354 | 0 |
DY281549 | 315 | 5 | 318 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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